Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 801 / 0 Major facilitator superfamily protein (.1) AT1G33440 740 / 0 Major facilitator superfamily protein (.1) AT1G69850 391 / 8e-129 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT3G54140 387 / 1e-127 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G27040 374 / 2e-122 Major facilitator superfamily protein (.1.2) AT5G01180 367 / 7e-120 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G26690 352 / 1e-113 Major facilitator superfamily protein (.1) AT2G02040 350 / 1e-112 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G62730 343 / 3e-110 Major facilitator superfamily protein (.1) AT1G12110 343 / 3e-110 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007437 [exp] 1154 / 0 AT1G59740 842 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 409 / 2e-135 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10033101 [exp] 401 / 1e-132 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10013276 [exp] 385 / 2e-126 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 382 / 3e-125 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10005417 [exp] 381 / 8e-125 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 380 / 1e-124 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 376 / 7e-123 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10037217 [exp] 372 / 1e-121 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229000 [exp] 889 / 0 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 885 / 0 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 779 / 0 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G064100 [exp] 405 / 3e-134 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 395 / 2e-130 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 395 / 3e-130 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.010G034300 [exp] 384 / 4e-126 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G111500 [exp] 373 / 5e-122 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.016G111800 [exp] 371 / 3e-121 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 367 / 1e-119 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024457 pacid=23170260 polypeptide=Lus10024457 locus=Lus10024457.g ID=Lus10024457.BGIv1.0 annot-version=v1.0 ATGGAAATGGAGGCAAGGAGAGTTCACAATAAGGGCACTAGTGGTGAGGGTAATAATATTATTGATCATGGGGAAGTAGTAGAGAGGAGCTATGTTGATT GGAGAGGCAGACCTTCCAACCCTCACAAGCATGGTGGAATGAGAGCTGCTTCTTTTGTTCTTGGGTTACAAGCATTTGAGATAATGGGGATAGCAGCAGT AGGGAACAACCTAATAACATATGTGATGAATGAGATGCACTTCTCACTGTCAAAGTCAGCAAACATTGTCACTAACTTTGTTGGGACAATCTTTATCTTG GCACTTGTTGGTGGCTACCTCTCTGACTCTTATCTTGGTTGTTTCTGGACCATGATCATCTTTGGCTTTGTCGAGCTTTCTGGGTTCATATTGCTGTCAG TCCAAGCTCATGTTCCACAACTGAAGCCACCAAAGTGCAACCTGGAGGATGAACATAATTGTATGGAGGCAAATGGGTTTAAGGCCGTAATCTTTTTTGT GGCCCTCTACTTAGTGGCATTAGGGAGTGGGTGTGTTAAACCAAACATGATTGCACATGGGGCAGACCAGTTCCATTTCCATCACAATAATCATAATCAT AACAATCAAGAAGAAGAAGAAGAAGAAGATGTAATTACTAGTGGAAGAAGAAAGCAGGAGTCAAAGAAGCTGTCCACTTACTTCAACTCTGCCTATTTTG CATTCTCAATTGGTGAACTCATAGCTCTCACTCTCCTTGTGTGGGTCCAGACCCACTCTGGAATGGATGTTGGCTTTGGTGTCTCTGCTGCTGTTATGGC CATGGGTTTGATCTCCTTGGTCTCTGGCACTCTCTATTACAGGAACAAACCCCCTCAAGGCAGCATCTTTACTCCTATTGCTCAAGTATTTGTGGCTGCT TTCCTAAAGAGAAAGCAAATCAACCCATCCAACCCACATAATATACAACACTCCAGAAGCCAAATTCAGGAGCTAAATGCTGTGAAGACACAAAGATTCA GGTTCTTGGACAAGGCATGCATTAAAGCTGAAGATGGGAGTGGTAATAGTGAGAGTCCATGGAGGTTGTGCAGTGTGAGTCAAGTGGAACAGGTGAAGAT ACTGATATCAGTGCTTCCAATATTTGCATGCACAATTGTGTTCAACACCATTCTAGCCCAACTCCAGACATTCTCAGTCCAACAAGGCAGAGCAATGAAC ACAAAACTTGGACATAACTTTGAAATCCCTCCAGCTTCCCTCCAAGCCATCCCTTACATCATCCTCATTGTTTTGGTCCCACTCTACGACGCTTTCTTTG TCCCCATGGCAAGGAAGTACACAGGCCACGAATCAGGGATCACACCTTTGCAACGAATAGGCTCCGGCCTGTTGCTAGCCACCTTCTCCATGGTGTCAGC TGCTGTCATGGAGAAGAAGAGGAGGGATCATGCAGAAGCCAGTGATGATCCAAACAACAAGCTGTCCATATTTTGGATCACACCACAGTTCCTTATATTT GGGTTGTCAGAGATGCTGACTGCTGTTGGTTTAATTGAGTTCTTCTACAAGCAGTCTTTGAAAGGGATGCAAGCATTCTTGACAGCAATCACTTACTGCT CATATTCATTTGGGTTTTACCTCAGCTCCATATTGGTGTCTCTGGTCAACAAAGTTACCTCAGATTCTTCAAGCCATGGTTGGCTGAGTGACAATGACCT GAACAAAGATAGGCTGGATCTTTTCTATTGGATGCTGGCAGTTCTGAGCGGCGTCAACTTTTTCAACTATCTGTTTTGGTCCAAGTGGTATCATCCTCCT TCCACATCTGAGGTCAACTTCCAACTAACTTTCAACTCTTCAAAAGACATTGGAGATGAAGATATACCATAA
AA sequence Show only first row Show all	>Lus10024457 pacid=23170260 polypeptide=Lus10024457 locus=Lus10024457.g ID=Lus10024457.BGIv1.0 annot-version=v1.0 MEMEARRVHNKGTSGEGNNIIDHGEVVERSYVDWRGRPSNPHKHGGMRAASFVLGLQAFEIMGIAAVGNNLITYVMNEMHFSLSKSANIVTNFVGTIFIL ALVGGYLSDSYLGCFWTMIIFGFVELSGFILLSVQAHVPQLKPPKCNLEDEHNCMEANGFKAVIFFVALYLVALGSGCVKPNMIAHGADQFHFHHNNHNH NNQEEEEEEDVITSGRRKQESKKLSTYFNSAYFAFSIGELIALTLLVWVQTHSGMDVGFGVSAAVMAMGLISLVSGTLYYRNKPPQGSIFTPIAQVFVAA FLKRKQINPSNPHNIQHSRSQIQELNAVKTQRFRFLDKACIKAEDGSGNSESPWRLCSVSQVEQVKILISVLPIFACTIVFNTILAQLQTFSVQQGRAMN TKLGHNFEIPPASLQAIPYIILIVLVPLYDAFFVPMARKYTGHESGITPLQRIGSGLLLATFSMVSAAVMEKKRRDHAEASDDPNNKLSIFWITPQFLIF GLSEMLTAVGLIEFFYKQSLKGMQAFLTAITYCSYSFGFYLSSILVSLVNKVTSDSSSHGWLSDNDLNKDRLDLFYWMLAVLSGVNFFNYLFWSKWYHPP STSEVNFQLTFNSSKDIGDEDIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59740			Major facilitator superfamily ...		Lus10024457 [exp]	0	1
AT1G59740			Major facilitator superfamily ...		Lus10007437 [exp]	1.0	0.9458
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	12.8	0.9010
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042012 [exp]	16.6	0.8478
AT1G11655			unknown protein		Lus10020050 [exp]	19.1	0.9081
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	23.7	0.8984
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	25.8	0.8890
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	32.5	0.8840
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	33.8	0.8811
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	35.4	0.8811
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	35.7	0.8891

Compare expression of checked genes

Lus10024457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.