Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02570 376 / 9e-132 nucleic acid binding;RNA binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007436 [exp] 540 / 0 AT2G02570 416 / 1e-147 nucleic acid binding;RNA binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229200 [exp] 421 / 5e-150 AT2G02570 354 / 3e-123 nucleic acid binding;RNA binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF06003 [flax] [poplar] SMN Survival motor neuron protein (SMN)
Representative CDS sequence Show only first row Show all	>Lus10024458 pacid=23170210 polypeptide=Lus10024458 locus=Lus10024458.g ID=Lus10024458.BGIv1.0 annot-version=v1.0 ATGCAAGGAGAAGGCGATGAACTCAGCATCGAAGAGCTGACTTCCAATCTCTCTACTTACAGAGAACAGCTTGATACCGTCCGTCAACTTTTGGCCGATG AACCTGAGAATTCTGAATATGCAGACATGGAGAAGGAACTCCACGAGGTCATTGCATTGACAGAAGAACTCCTTGCCACTGCAAAGCAGAACGAGGTTCC AGGATTAGCTGTTAGTGCTGGAAGTAATGTTTCTCCAACTTTTGGTCAAGCTAAGGAATTAACTGACAACCCTGATCATCTTGAGAGGTTTCCTGTGGGC TCTAGAGTTCAAGCAGTCTATAGCGAGGATGGAGAATGGTATGATGGAACAATTGAGGCTATCACTCCTAACGGCTATTATGTTGCTTATGATGGATGGG GAAACAAAGAAGAGGTGGATCCTGACAATGTTAGACCAGTTGAGACCAATGCCTTAGTGGAGGCTGAAAGAGTAGCTGAAGCTACAAAACTGGCCATCAA AAGGAAAATTGCACAGGCTGGTTCAGTTGATTTTGAGTCACGTACTTTGCCAGCAAAGCTTCGTATAGAACCTGATGATCCCGAGGATGTGAAAGCTACA AAGCGGAAGAAGATACATGCTTTTAAGTCGAAGATGAGAGTAGAAAAGCTTGAAGTTGCACAAAATAAGCGGCAGAATGCTTGGCAGCAGTTTCAGACAA CTAAAGGGAAGACAAAGAAGGTTGGTTTCTTCTCAGGCCGAAAACGAGAAAGCATATTTAAGTCGCCCGATGATCCTCATGGCAAGGTTGGTGTGACGGG GAGTGGAAAAGGATTAACAGAGTTCCAGAAAAGGGAGAAGCATCTACATCTCAAGGGCGGAGCTGGAGAAACGGACGGCTAG
AA sequence Show only first row Show all	>Lus10024458 pacid=23170210 polypeptide=Lus10024458 locus=Lus10024458.g ID=Lus10024458.BGIv1.0 annot-version=v1.0 MQGEGDELSIEELTSNLSTYREQLDTVRQLLADEPENSEYADMEKELHEVIALTEELLATAKQNEVPGLAVSAGSNVSPTFGQAKELTDNPDHLERFPVG SRVQAVYSEDGEWYDGTIEAITPNGYYVAYDGWGNKEEVDPDNVRPVETNALVEAERVAEATKLAIKRKIAQAGSVDFESRTLPAKLRIEPDDPEDVKAT KRKKIHAFKSKMRVEKLEVAQNKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPHGKVGVTGSGKGLTEFQKREKHLHLKGGAGETDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	0	1
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	1.0	0.9283
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	2.0	0.9036
AT3G13000			Protein of unknown function, D...		Lus10037293 [exp]	2.6	0.8736
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	6.7	0.8835
AT5G14710			unknown protein		Lus10014543 [exp]	7.4	0.8249
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	8.5	0.8753
AT3G62450			unknown protein		Lus10021958 [exp]	10.7	0.8545
					Lus10019353 [exp]	11.0	0.8735
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	11.0	0.8708
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10038187 [exp]	17.1	0.8273

Compare expression of checked genes

Lus10024458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.