Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10290 921 / 0 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G59610 914 / 0 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT3G60190 167 / 2e-43 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 162 / 7e-42 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G14830 154 / 2e-39 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G61760 149 / 1e-37 ADL1B DYNAMIN-like 1B (.1) AT5G42080 144 / 4e-36 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007434 [exp] 1078 / 0 AT1G59610 1298 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10007887 [exp] 874 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10030357 [exp] 871 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10019170 [exp] 160 / 5e-41 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 160 / 6e-41 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 159 / 8e-41 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 156 / 2e-39 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 151 / 3e-38 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10030255 [exp] 136 / 3e-33 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001400 [exp] 1016 / 0 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Potri.004G228400 [exp] 994 / 0 AT1G59610 1301 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.019G068700 [exp] 905 / 0 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.010G105900 [exp] 159 / 8e-41 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.014G043600 [exp] 155 / 1e-39 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 153 / 6e-39 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 151 / 4e-38 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 150 / 6e-38 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 140 / 2e-34 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 135 / 4e-33 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0266 [flax] [poplar] PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0266 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10024461 pacid=23170253 polypeptide=Lus10024461 locus=Lus10024461.g ID=Lus10024461.BGIv1.0 annot-version=v1.0 ATGGATGAGTCCCTGATTGGTGAGCATGTCCAACACAACGATGCTATCTTGTTGGTGGTAATACCTGCTATTCAGGCACCTGAAATTTCATCATCCAGAG CACTCAGAGTTGCAAAGGAATACGATTCAGAGAGCACCAGAACGGTTGGTGTTATCAGTAAAATTGACCAAGCAGCTACAGAGGTAAAAGCACTTGCAGC TGTTCAGGCACTCCTTATGAATCAAGGACCTCCTAAGACATCCGATATCCCTTGGGTTGCTTTAATTGGTCAATCTGTTTCTATAGCTTCAGCACAATCA GGAAGTGGTTCATCTGAGAGTTCCTTAGAAACTGCTTGGCTAGCTGAGAGTGAAAGTCTAAAATCCATATTGACTGGAGCACCACAAAACAAACTTGGGA GAGTAGCCCTTGTGGAGGCCTTAGCTGGTCAGATCCGCAATCGTGTGAAACTCAGACTTCCTAGTGTTCTCTCTGGGCTTCAGGGCAAGTCCCAAATTGT TCAGGATGAATTAGTTAGGCTTGGTGAACAAATGGTGGATATTTCTGAAGGAACAAGAGCTCTAGCTTTGGGGCTTTGCCGTGAATTTGAGGAAAAATTT CTCCAGCACCTTGCTGGTGGTGAGGGTAATGGCTGGAAACTTGTAGCAAGTTTCGAGGGAAATTTTCCAAACAGGATCAAACAGCTTCCCTTAGATAGGC ATTTTGACATAAGTAATGTCAAAAAGATTGTCCTAGAAGCAGATGGTTATCAACCCTATCTAATATCTCCAGAGAAAGGTTTACGATCTTTAATAAAAGG TGTTCTAGAGTTGGCAAAAGAGCCCTCACTGTTATGCGTAGATGAGGTGCATCGGGTGCTTGTGGATCTAGTGTCTTCTGCTGCTAACGCGACACCTGGC CTTGGAAGATATCCTCCATTTAAGAGAGAGGGATTCAAGAATGAAGCTAAAAAGATGGTGGTTGCTCTTGTGGACATGGAGCGTGCATTTGTTCCACCTC AACATTTTATTCGTTTAGTACAGAGAAGAATGGACAGGCAACGAAGGGAAGAAGAAGTAAAGAGCAAATCCTCTAAAAAAGCTATGGAGGCTGAACAATC CATACAGAATAGGACAACTAGTCCTCAGATGGGAGGACAACAGTCAGGAGGAACCTTGAAGTCACTGAAGGAAAAATTTGGTCAGCAAGATAAAGAGCCA CAGGAAGGATCCACCTTGAAAACTGCCGGACCAGGTGGTGAAATAACAGCAGGGTTTCTGTTCAAGAAAAGTGGGAAGACAAATGGATGGAGTAGGCGGT GGTTTGTTCTGAATGAAAAAAGTGGCAAGGCAATGGCATTCTATTCACAAGGTTCAGTACTGTTGCAGCTAGGGTACACCAAGAAACAAGAAGAACGACA CTTCCGTGGTGTCATTACGTTGGAGGAATGTAGCATCGAGGATGTTGAAGAAGAAGAGTCATCATCGAAGAGTTCCAAGGATAAAAAGTCTTCTGAAAAG GGAACCCATCTCATTTTTAAGATTACCACTAGAGTTCCATACAAGACTGTCTTGAAAGCTCAGAGCACTATCATGTTAAAAGCGGAGAGTGTGGCAGAGA AGGTTGAGTGGCTCAATAAGCTGAGGACCGTTATCCAAGCCAAAGGAGGTCAAGTGACGGAACCTGGGCATCCTATGCGCCAGAGTTTATCAGATGGTTC ACTTGATACAATGGTTCGAAGACCTGCAGACCCCGAAGAAGAGCTGCGGTGGATGTCACAAGAAGTGCGTGGCTATGTGGAAGCTGTTCTTAACAGTCTT GGAGCCAATGTCCCAAAAGCAGTCGTACTTTGTCAAGTTGAGAAAGCTAAGGAAGACATGCTCAACCAGCTGTATAGCTCCGTTAGTGCTCAAAGCTATG CAGAGATCGAGGAGGTGCTTCAAGAGGACCATAATGTAAAGCGCAAACGGGAGCGTTCTCAGAAGCAGTCTTCTATACTTTCGAAACTCATTCGAAAGCT TGGCATCCATGATAACCGAGCAGCTGCTGCATCAGGCTGGTCTGATGATGGTGAATCAGGCAATGACAGAACGATTGAAAGCAGCTCCAGGAAAAGTGGA TCGTCGTCAGTGGGAGACGACTGGAGAACAGCGTTCGAGTCTGCAGGGAATGGCGGTGCCAGTGGGTCGTTTGGAGGATCATCAAGGTCGCACAGTAGAA GGAATAGTGATCCATCTCAGGATTGGGAAGCAAGCTCAGGATCAAGCAACAGCAGCCGGCGTACACCAACTCGGATGCCACCTGTGCCGCCATCATCTGG TTCAACTTATAGATATTGA
AA sequence Show only first row Show all	>Lus10024461 pacid=23170253 polypeptide=Lus10024461 locus=Lus10024461.g ID=Lus10024461.BGIv1.0 annot-version=v1.0 MDESLIGEHVQHNDAILLVVIPAIQAPEISSSRALRVAKEYDSESTRTVGVISKIDQAATEVKALAAVQALLMNQGPPKTSDIPWVALIGQSVSIASAQS GSGSSESSLETAWLAESESLKSILTGAPQNKLGRVALVEALAGQIRNRVKLRLPSVLSGLQGKSQIVQDELVRLGEQMVDISEGTRALALGLCREFEEKF LQHLAGGEGNGWKLVASFEGNFPNRIKQLPLDRHFDISNVKKIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSLLCVDEVHRVLVDLVSSAANATPG LGRYPPFKREGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMDRQRREEEVKSKSSKKAMEAEQSIQNRTTSPQMGGQQSGGTLKSLKEKFGQQDKEP QEGSTLKTAGPGGEITAGFLFKKSGKTNGWSRRWFVLNEKSGKAMAFYSQGSVLLQLGYTKKQEERHFRGVITLEECSIEDVEEEESSSKSSKDKKSSEK GTHLIFKITTRVPYKTVLKAQSTIMLKAESVAEKVEWLNKLRTVIQAKGGQVTEPGHPMRQSLSDGSLDTMVRRPADPEEELRWMSQEVRGYVEAVLNSL GANVPKAVVLCQVEKAKEDMLNQLYSSVSAQSYAEIEEVLQEDHNVKRKRERSQKQSSILSKLIRKLGIHDNRAAAASGWSDDGESGNDRTIESSSRKSG SSSVGDDWRTAFESAGNGGASGSFGGSSRSHSRRNSDPSQDWEASSGSSNSSRRTPTRMPPVPPSSGSTYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Lus10024461 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	7.1	0.8491
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	14.6	0.8290
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	20.1	0.8005
AT2G32970			unknown protein		Lus10035309 [exp]	24.7	0.8331
AT5G66810			unknown protein		Lus10022461 [exp]	35.5	0.8226
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	37.5	0.7938
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	39.7	0.8146
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	44.9	0.7624
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	62.8	0.8026
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	66.2	0.8082

Compare expression of checked genes

Lus10024461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.