Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59610 199 / 2e-60 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 190 / 5e-57 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007434 [exp] 239 / 9e-75 AT1G59610 1298 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10007887 [exp] 203 / 1e-61 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10030357 [exp] 203 / 2e-61 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228400 [exp] 187 / 8e-56 AT1G59610 1301 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.003G001400 [exp] 186 / 2e-55 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Potri.019G068700 [exp] 180 / 3e-53 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.013G096775 [exp] 54 / 3e-10 AT1G10290 49 / 7e-08 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Lus10024462 pacid=23170194 polypeptide=Lus10024462 locus=Lus10024462.g ID=Lus10024462.BGIv1.0 annot-version=v1.0 ATGGAGGCGATCGATGAATTGTCACAACTGTCAGACTCGATGCGCCAAGCATCCTCTGTGCTTGCTGACGAAGAAGTAGACGAGACGCCATCATCTTCCT CTTCCAGACGTCCTACTACTTTTCTCAACGTCGTCGCTCTTGGCAATGTCGGTTCTGGTAAATCTGCTGTATTGAATAGTTTGATTGGGCATCCAGTTCT GCCAACAGGGGAAAATGGTGCTACTCGTGCTCCAATATGTATTAACTTGAGTAGGGATACTTCTGTAAACAGCAGATCGATTATTTTGCAAATCGACAAC AAAACTCAACAGGTTTCTGCAAGTGCTCTTCGGCGGTCTCTACAGGATAGGCTAAGCAAGAGCTCTTCAGGCAGGAGTCGTGAGGAAATTTCTTTGAAGC TTCAAACTAGTACAGTAGAGAAGAGTGGAGAGTGA
AA sequence Show only first row Show all	>Lus10024462 pacid=23170194 polypeptide=Lus10024462 locus=Lus10024462.g ID=Lus10024462.BGIv1.0 annot-version=v1.0 MEAIDELSQLSDSMRQASSVLADEEVDETPSSSSSRRPTTFLNVVALGNVGSGKSAVLNSLIGHPVLPTGENGATRAPICINLSRDTSVNSRSIILQIDN KTQQVSASALRRSLQDRLSKSSSGRSREEISLKLQTSTVEKSGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	0	1
					Lus10003753 [exp]	2.2	0.9363
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10003752 [exp]	2.6	0.8730
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	3.2	0.9363
					Lus10021760 [exp]	3.6	0.8092
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	3.9	0.9363
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	4.1	0.7643
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	4.5	0.9363
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	6.3	0.9132
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	7.5	0.8667
					Lus10001193 [exp]	9.3	0.6879

Compare expression of checked genes

Lus10024462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.