Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024463 pacid=23170241 polypeptide=Lus10024463 locus=Lus10024463.g ID=Lus10024463.BGIv1.0 annot-version=v1.0 ATGGCGGTTTTCCAAGGCCAGGTAGCGACGGCAACGGAGGGGAGAAGCTTCGGCGGCGAGAGGGCAGCGTTCCAACTCCCAAGAAAGTTGGAGTTCGCTG GTGGTCGGCGGAAACTGGACACAGCTCGCCTGCGGGGACCTAGTCCGCGGGAGAAGAAGAGGGACCAATCTGCAAGTCCAGAAAGACTTGGGCCAGTTTT GTCAACGACTGGAAGTTTTGGATCAGCTAGTGTAACGAAGGCGTTTAGAGGACTAGCGCAACGTTTCGGTCCCAGCAAGTTTCAAAATATTGCAAAGAGG TAA
AA sequence Show only first row Show all	>Lus10024463 pacid=23170241 polypeptide=Lus10024463 locus=Lus10024463.g ID=Lus10024463.BGIv1.0 annot-version=v1.0 MAVFQGQVATATEGRSFGGERAAFQLPRKLEFAGGRRKLDTARLRGPSPREKKRDQSASPERLGPVLSTTGSFGSASVTKAFRGLAQRFGPSKFQNIAKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024463 [exp]	0	1
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	2.8	0.8377
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	4.9	0.8296
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	8.5	0.7869
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	11.0	0.7752
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	11.0	0.7554
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10019468 [exp]	11.0	0.7799
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	12.6	0.7888
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	14.9	0.7569
AT2G35450			catalytics;hydrolases (.1)		Lus10037047 [exp]	16.3	0.8203
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10039292 [exp]	19.0	0.7926

Compare expression of checked genes

Lus10024463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.