Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49890 961 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 790 / 0 Voltage-gated chloride channel family protein (.1) AT5G40890 654 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 647 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G26240 443 / 2e-144 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007433 [exp] 1212 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10038118 [exp] 784 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 661 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 458 / 4e-150 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 443 / 3e-144 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 214 / 1e-63 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 134 / 1e-35 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228300 [exp] 1029 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.003G001500 [exp] 1025 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 943 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 936 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 809 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 791 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 655 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 468 / 8e-154 AT5G26240 1149 / 0.0 chloride channel D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10024466 pacid=23170236 polypeptide=Lus10024466 locus=Lus10024466.g ID=Lus10024466.BGIv1.0 annot-version=v1.0 ATGGAGGATCATGGAGAGGACAATGATATAGAGATAGAGTCAGGTGGAGGGATTGGAGATGACAAGGATTTCAGGTCAATGAGAGAGCCACTCCTTCTTA GGAACAGGCAGAACAATACTTCTCAGATTGCCATTGTTGGTGCCAACGTTTGTCCCATTGAAAGCCTTGATTATGAGATTGTCGAGAATGAATTATTTAA GCAAGATTGGAGATCGAGGAAGAAAGTTGAGATATTTCAATATGTTATCCTAAAGTGGGCACTTGCCCTTCTGATTGGATTGGGAACCGGGCTTGTTGGC TTTTTCAACAACATTGCAGTTGAGAATGTTGCTGGATTTAAGCTTCTATGGACCAACAGTCTCATGCTAAAGGACAAATATTACCTGGCATTTGGAGCAT TTGCTGGTTGCAATATGGTTTTGGCCGTTGCTGCTGCTGCACTTTGTGCTTACATAGCTCCTGCCGCAGCTGGTTCTGGGATACCTGAAGTTAAAGCATA CCTTAATGGCGTGGATGCTCCTTCTATACTTGCTCCGAGCACCCTTTTCGTAAAGATTTTTGGGTCCATCTTTGGGGTTGCTGCTGGATTGGTTGTGGGA AAGGAGGGACCAATGGTGCATACTGGTGCTTGCATAGCTGCCTTGCTTGGACAAGGCGGTTCTAAGAAGTATCATTTAACATGGAGATGGTTGAGGCACT TCAAGAATGATCGGGATAGACGAGATTTGGTGACTTGCGGTGCTGCAGCTGGTGTGGCAGCTGCTTTCCGTGCTCCTGTTGGTGGCGTTCTATTTGCTCT TGAGGAAGCTGCTTCTTGGTGGAGGAGTGCTCTACTCTGGAGAACTTTCTTTACAACTGCTGTAGTTGCAGTGGTATTAAGAGGTTTCATGGACTTCTGT AAATCTGGAAGATGTGGGCTTTTCGGTGAAGGAGGTCTAATCATGTTTGATGTCAACTCATCAACTGCCAGTTACGGCACCCCGGATTTGTTGGCAATCA TTTTTCTTGGAGTTCTAGGAGGCCTTTTAGGAAGCTTGTACAATTATCTAGTTGACAAGGTCCTTCGCACTTATAGCATCATCAATGAGAAGGGTCCCAT ATTCAAGATCCTACTTATCATGTGCATTTCCCTTCTGACATCTTGCTGCTCGTATGGTCTCCCATGGCTTTCAGCATGCACCCCCTGCCCTCCCCACCTG GGAGAGCAGTGTCCCACTGCTGGCCGCTCCGGAAATTACAAGAATTTCCAATGTCCAGAAGGGCAATACAATGACCTTGCTTCTCTCTTCTTCAACACAA ACGATGATGCCATACGCAATCTGTTGAGCTCCGGGAGTTCAAAACAGTTCTACATCCCAACCCTCTTGATTTTCTTTGGTGCTATATATTTCCTCGGCAT AGTTACTTATGGCACTGCAGTTCCTTCTGGTCTCTTCATTCCTGTCATTCTTGCTGGCGGATCATATGGTCGTCTAGTTGGGCGCTTGCTTGGTTCCTGG TCTCAACTTGATGCCGGTATCTTTGCTCTCCTTGGTGCTGCATCCTTCCTCGGTGGCACGATGAGAATGACTGTCTCACTATGTGTGATACTTCTGGAAC TCACTAACGACCTGCTGATGCTTCCGTTGATGATGTTGGTTCTCTTGATCTCAAAAACAGTGGCAGATATTTTCAACAAGGGTGTTTATGACCAGATTGT TAAGATGAAAGGATTACCATACATGGAAGCTCACGCAGAGCCATACATGAGGCAGTTAGTAGCAGGAGATGTTGTTTCCGGCCCATTGTTCACCTTCACT GGGGTTGAGAAAGTTGGGAACATTTGGCATGCATTGAAACTAACCAGGCACCATGGTTTCCCCGTGATAGACGAACCACCTTACACAGATGCACCTGAGT TGTGTGGGCTGGTCCTGAGGTCTCATCTCCTTGTTTTGCTTAAAGGGAAGAAGTTCACAAAGCAAAAGGTGATGACAGGATCTGAAATTATCCGGAGGTT CAAGGCACACGATTTTGCGAAAGCCGGTTCAGGAAAGGGTGTTAAGCTGGAGGAGTTGGATATATCTGAGGAGGAGATGGAGATGTATGTTGATCTGCAC CCCATCACTAATACATCACCTTACACTGTCGTCGAGACTATGTCCCTGGCGAAAGCAGCTGTTCTTTTCCGGGAGCTTGGGCTTCGTCACCTTTTGGTCG TGCCAAAAAAGCCAGGGAGACCTCCCATCGTCGGAATCCTGACACGGCACGATTTTGTACCGGAGCACATCCTGGGACTCTACCCCCAAGTCAACCCTCA CAAGTAG
AA sequence Show only first row Show all	>Lus10024466 pacid=23170236 polypeptide=Lus10024466 locus=Lus10024466.g ID=Lus10024466.BGIv1.0 annot-version=v1.0 MEDHGEDNDIEIESGGGIGDDKDFRSMREPLLLRNRQNNTSQIAIVGANVCPIESLDYEIVENELFKQDWRSRKKVEIFQYVILKWALALLIGLGTGLVG FFNNIAVENVAGFKLLWTNSLMLKDKYYLAFGAFAGCNMVLAVAAAALCAYIAPAAAGSGIPEVKAYLNGVDAPSILAPSTLFVKIFGSIFGVAAGLVVG KEGPMVHTGACIAALLGQGGSKKYHLTWRWLRHFKNDRDRRDLVTCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMDFC KSGRCGLFGEGGLIMFDVNSSTASYGTPDLLAIIFLGVLGGLLGSLYNYLVDKVLRTYSIINEKGPIFKILLIMCISLLTSCCSYGLPWLSACTPCPPHL GEQCPTAGRSGNYKNFQCPEGQYNDLASLFFNTNDDAIRNLLSSGSSKQFYIPTLLIFFGAIYFLGIVTYGTAVPSGLFIPVILAGGSYGRLVGRLLGSW SQLDAGIFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLMMLVLLISKTVADIFNKGVYDQIVKMKGLPYMEAHAEPYMRQLVAGDVVSGPLFTFT GVEKVGNIWHALKLTRHHGFPVIDEPPYTDAPELCGLVLRSHLLVLLKGKKFTKQKVMTGSEIIRRFKAHDFAKAGSGKGVKLEELDISEEEMEMYVDLH PITNTSPYTVVETMSLAKAAVLFRELGLRHLLVVPKKPGRPPIVGILTRHDFVPEHILGLYPQVNPHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	0	1
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	1.0	0.8296
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	2.0	0.8199
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	2.0	0.7812
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	5.0	0.7802
AT3G51580			unknown protein		Lus10025224 [exp]	5.5	0.7865
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10037657 [exp]	7.5	0.7382
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	8.4	0.7633
AT4G17100			unknown protein		Lus10001086 [exp]	10.6	0.7666
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10019297 [exp]	11.7	0.7267
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	12.0	0.7699

Compare expression of checked genes

Lus10024466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.