Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10280 507 / 6e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 365 / 2e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 362 / 3e-123 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 357 / 2e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 352 / 5e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68390 351 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 333 / 5e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 320 / 1e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 319 / 3e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 306 / 3e-98 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002989 [exp] 796 / 0 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 556 / 0 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 555 / 0 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 372 / 4e-127 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 372 / 4e-127 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 372 / 1e-124 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 348 / 1e-117 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 347 / 1e-116 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 346 / 3e-116 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001700 [exp] 565 / 0 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 539 / 0 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 377 / 4e-129 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 377 / 7e-129 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 367 / 4e-125 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 363 / 7e-124 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 358 / 9e-122 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 357 / 2e-121 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 357 / 3e-121 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 351 / 4e-119 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10024468 pacid=23170186 polypeptide=Lus10024468 locus=Lus10024468.g ID=Lus10024468.BGIv1.0 annot-version=v1.0 ATGGCAAGATACAGAGCATCAGATAAAGAAGACGGACGCGAGAATTCGTTCCTGAGTTTGCTTAGACTCCTGCAACTACTGTCTTTCTCTCTAGTTTTTG CTGCTGGTATAGTCCTTGGTTTATTAGCAAGTCCTCATGTCAACAACCTCATCAGCTCACAGAGCAACTTCTTCTTAGCTAGCAACCTTGCTTTTACCAC AATTTCAGCTGCCAACAATTGTAGCATCAGCGGCGATGCTGCCCAATGCAAGCCTTGTGACAAGGCTGATTGTTTGGACATGGACACGTTTGTTCATCCC AGTAACTTGGCTCATGGGATGAGTGATGATGAGATTTTCTGGAGGGCTTCTTTGATGCCTTATAAGGAGGAGTATCCGTTTGACAGAGTTCCTAAACTGG CTTTCATGTTCTTGACTAGAGGGCCTTTGCCTTTGTTGCCCCTTTGGGAAAGGTTCTTCAAGGGTCATGATGATTACTTCAACATCTACATTCATACAAA TCCTGATTATGTGCTCCATGTTTCTGAGGATTCTGCGTTCTACGGAAGACAGATTCCAAGTCGGAAAGTTAAATGGGGAACAATGTTACTGCTTGATGCT GAAAGGCGACTTCTAGCCAACGCTCTACTGGACTTTTCTAATGAGCGGTTTCTTCTTCTCTCAGAGAGCTGCATCCCTGTCTACAACTTCCCAACTGTCT ACAGGTATCTTATCGAATCGGAACAAGGGTTTGTAGAGTCATACGACGAACCTTCCCGTTATGGGCGTGGCAGATACAACCGCAAAATGCTTCCTAACAT AAAGCTCTATCAATGGAGGAAAGGATCTCAATGGTTTGAGATGCCTCGTGCTCTAGCTGTTCGAATAGTGTCAGACACAAAGTACCATTCCATTTTCCAG AAATACTGCAGACCAGCTTGCTATCCGGATGAGCATTTCATCCCTACTTTGGTGAACATGTTCTATGGACCTCTCAACTCGAATCGGACAGTGACCTGGG TTGATTGGTCCCTTGGAGGCCCTCACCCTGCAACGTATACTGCGATTAATATAACAGAAGGGTTCATAGAATCGATTCGGAACAATGGAACACAATGTGC ATACAACTCTGGTACAACATCCATATGCCACCTGTTTGCTAGAAAGTTCGATGCAAGTGCATTGCAGCCATTGCTGAACCTCACCTCAAAGGTGTTGAAG TTCTGA
AA sequence Show only first row Show all	>Lus10024468 pacid=23170186 polypeptide=Lus10024468 locus=Lus10024468.g ID=Lus10024468.BGIv1.0 annot-version=v1.0 MARYRASDKEDGRENSFLSLLRLLQLLSFSLVFAAGIVLGLLASPHVNNLISSQSNFFLASNLAFTTISAANNCSISGDAAQCKPCDKADCLDMDTFVHP SNLAHGMSDDEIFWRASLMPYKEEYPFDRVPKLAFMFLTRGPLPLLPLWERFFKGHDDYFNIYIHTNPDYVLHVSEDSAFYGRQIPSRKVKWGTMLLLDA ERRLLANALLDFSNERFLLLSESCIPVYNFPTVYRYLIESEQGFVESYDEPSRYGRGRYNRKMLPNIKLYQWRKGSQWFEMPRALAVRIVSDTKYHSIFQ KYCRPACYPDEHFIPTLVNMFYGPLNSNRTVTWVDWSLGGPHPATYTAINITEGFIESIRNNGTQCAYNSGTTSICHLFARKFDASALQPLLNLTSKVLK F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10024468 [exp]	0	1
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10002989 [exp]	8.9	0.8795
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	14.4	0.9158
AT1G27752			Ubiquitin system component Cue...		Lus10007753 [exp]	21.9	0.8957
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	36.9	0.8923
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	42.7	0.8967
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	45.2	0.8811
AT2G20320			DENN (AEX-3) domain-containing...		Lus10000499 [exp]	89.1	0.8878
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10024921 [exp]	254.8	0.8588

Compare expression of checked genes

Lus10024468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.