Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10270 528 / 1e-171 GRP23 glutamine-rich protein 23 (.1) AT3G49240 211 / 1e-57 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60980 160 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G60960 143 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28340 123 / 1e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28380 121 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 122 / 3e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 117 / 7e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 116 / 2e-26 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 113 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002990 [exp] 1213 / 0 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10024470 [exp] 241 / 2e-72 AT1G10270 209 / 3e-62 glutamine-rich protein 23 (.1) Lus10018109 [exp] 205 / 1e-55 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022406 [exp] 172 / 1e-44 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 108 / 8e-24 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 107 / 2e-23 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 107 / 2e-23 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 105 / 6e-23 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 103 / 3e-22 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227800 [exp] 603 / 0 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.003G002950 [exp] 588 / 0 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.012G015400 [exp] 160 / 1e-40 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 114 / 1e-25 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 113 / 1e-25 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 113 / 2e-25 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 109 / 3e-24 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 107 / 1e-23 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 105 / 4e-23 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046100 [exp] 105 / 6e-23 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024469 pacid=23170199 polypeptide=Lus10024469 locus=Lus10024469.g ID=Lus10024469.BGIv1.0 annot-version=v1.0 ATGTCTCTTTACCGTGTCCTCCTTCTCAACCGCTCCTCTTCCTCATCTGCCACCTCCTATGCGCCATCCTTAACGCGAGCCCTCCACTACTTCACCTCAC CACCCGCCACCTCTCACCCACTCACCACCCCTCAACTTTCAATCCCTTCATCGCGACGAAGTTTTGCCTTCTCCTCCGCTGAAGAAGCTGCCGCTGAACG TCGCCGGCGTAAACGGCGCCTCCGCATCGAACCTCCGCTGCACGCTCTTCAGCGTAACCCTTACCCTCCTCCTCGGGATCCCAATGCTCCCCGTCTTCCC GATTCCACTTCAGCTCTTGTTGGCCCTCGACTTAGCTTGCATAACAATGTCCAGTCGCTTATTAGAGCCTTTGATCTTGATGCTGCTTCTTACCTCGCTC GCACCGCTGTTTTCTCCAGAACTAGGCCCACTGTCTTCACATGTAATGCGATTATAGCTGCTATGTATCGAGCTAAACGGTACAGTGACGCCATTGCTTT GTTTAAGTACTTCTTCGAGCAAAATGATATAGTGCCTAATGTCGTCTCTTATAATAATGTGATCAACGCGCACTGTGATGAAGGGAGAGTTGATACAGGG CTTGAGGTTTACAAGCATATAATTGCAAATGCACCCTTTAGTCCTTCCCCTGTTACTTACAGACATCTTACTAAAGGCTTGATCGATGCCGGGAGAATTT GGTTTAAGCAAGGAAAGGACAAGGAAGCTATGGAGAGTTACAGGTCGTTGATGGCTAGAAAATTTAGAATGGTACCTGCTACTTGTAATGTGCTTCTTGA GGTTTTGCTTCGGTATGGGAAGAAAGACGCAGCCATGGAGTTGTTCGAGGAAATGTTGGATAATCATACCCCACCGACACTCCAAGCTGTGAATTCTGAA ACTTTTAGTCTAATGGTGGACGAGTGTTTTAAAGAAGGGAAATTTGATGAGGCCGTCGAAACATTTAGGAAGGCTGGTACGAAGGCTAAGTCAAGGCCTT TTGCGATGGATGTTGCTGGTTACAATAATATCATCATAAGATTTTCAGAGAGAGAAATGATGACAGAGGCTGAACAGTTTTTTACTGAATTGATGAGCAA GTCCTTGTCTCCAAATGTCACAAGCTACAAGACGTTGATTGAGGCATATCTGAAGTTGGAAAGGATTGACGATGCCCTTAAGATTTTTGACAAAATGGTT GATGCTGGCCTGTGGGTGGTGGCAAGTTTTGGCACGAGGGTTTTTGGTGAGTTGATAAAAAACGGTAAAGCAGTGGAATGTGCACAGATTATGATAAAAA TGGGGACGATGATGGCTGAGAAAATGGGAGAGAGAGATGTGAAACCTGATTCCATGATTTATGATGTCGTGGTTAGGGGCCTTTGTGATGCTGGAGAATT AGACTGCAGCAGAGATGTGATAGACCAAATGATGTCCTATGGTGTCGGTATTCATCCTTCTTTGAAAGAATTTGCAAGGAAGGCATTTGGAGATGCTGGG CGGGGTCAAGAGATTGAGAAGCTTCTAGATGAAAATCAATACAGGAATACTCAAAGACCACTGTTCACGGGTAGGCAGCCTCAAACTCTATTTGGAAGCG AACAGTTCTCAGGAAAATCTTCAACGGGTGTAAACTCACTTTTTGGTCAGCCAAGATACCAGTCACCATCTGCTTATAGTAGCGCAGGGCAATCAGCATC CAGTTCTTCCCAATGGACAGCGCAGCAGAGTTCACTTGCTTCTCAAAGGTGGGGACGGGCACCATCTGAGTCGGCTCCCCTTCAAGGACAACAACCATCG TGGTCCTCCCAAAATCACCAGCAATTTGGCTCGTCTCCAGCACAAGAACAGAAACCATCGTGGCTATCCCCAAAACACCAGCAATCTGGCCAGTCTACCA CACAAGGACAACAACCATTGTGGTCATCCTCAAATCACCAGCAGTCTGGCTCGTCTCCTACACAAGGACAACAACCATCATGGTCATCCTCAAATCACCA GCAGTCTGGCTCGTCTCCTACACAAGGACAACAACCATCATGGTCATCTCCCACTCGAGGACAGCAACCCTCTTGGTCATCTCCTACGCAAGAGCAAGCG GCATCCTGGTCTCCTTCAATGCATGGACAGAATTCATCCCCCTCTTCTCCATCGCAAGGACAACAACCATCATGGTCATCTCCCACTCGAGGACAGCAAC CCTCTTGGTCATCTCCTACGCAAGAGCAAGCGGCATCCTGGTCTCCTTCAATGCATGGACAGAATTCATCCCCCTCTTCTCCATCGCAAGGACAACAACC ATCATGGTCATCTCCCACTCGAGGACAGCAACCCTCTTGGTCATCTCCTACGCAAGAGCAAGCGGCATCCTGGTCTCCTTCAATGCATGGACAGAATTCA TCCCCCTCTTCTCCATCGCAAGGACAACAACCATCATGGTCATCTCCCACTCGAGGACAGCAACCCTCTTGGTCATCTCCTACGCAAGAGCAAGCGGCAT CCTGGTCTCCTTCAATGCATGGACAGAATTCATCCCCCTCTTCTCCATCGCAAGGACAACAACCATCATGGTCATCTCCCACTCGAGGACAGCAACCCTC TTGGTCATCTCCTACGCAAGAGCAAGCGGCATCCTGGTCTCCTTCAATGCATGGACAGAATTCATCCCCCTCTTCTCCATCGCAAGGACAACAACCATCA TGGTCATCTCTTGCTTCAGGGTTGAACTCATCTCAGCCATCTTATGCTAGTGGACAGTCATTTTGGTCCTCTCGAGATGCAGGACAGCAGCAATCATCTT GGTCCTCTCCTATTGGCGCACATCAGTCCTCAGGTACCCAGCATACGAATAGAACATATGAAAATGCTTCGTCTTGGGCATCATATGATTCTTCAGAAGC ACCTTATGTTCCTGCGCAAAATGCTGGACAACCTTCCTCTATTGCGTCCCATGTAGCAGGCAACCATCATCCTATTGGACACCTTCACGTGGCAGGGCAA AACCATTGGCAAGACAGCCAACAGCAGTTTGATCCAATGGCGAGACAACAACCTGGGGGACATCGACAATCACCTCAATGGCAAGGCAGCCACCACTCTC CGGTGGCAGGACGAGATCAGTGGCAAGGAAACCAACAACAGTTTGATCCAATGGGTGGACAACAACAACAACAACAACAAACTGAACGTCCAGATAATTC AAACAGTCGAGACAGTCATCTCAATGGCAACAGTACAGCCAGCGTGCCGCAGCTTAATTATTTGGTACAAAGTGCCGTAGAATAA
AA sequence Show only first row Show all	>Lus10024469 pacid=23170199 polypeptide=Lus10024469 locus=Lus10024469.g ID=Lus10024469.BGIv1.0 annot-version=v1.0 MSLYRVLLLNRSSSSSATSYAPSLTRALHYFTSPPATSHPLTTPQLSIPSSRRSFAFSSAEEAAAERRRRKRRLRIEPPLHALQRNPYPPPRDPNAPRLP DSTSALVGPRLSLHNNVQSLIRAFDLDAASYLARTAVFSRTRPTVFTCNAIIAAMYRAKRYSDAIALFKYFFEQNDIVPNVVSYNNVINAHCDEGRVDTG LEVYKHIIANAPFSPSPVTYRHLTKGLIDAGRIWFKQGKDKEAMESYRSLMARKFRMVPATCNVLLEVLLRYGKKDAAMELFEEMLDNHTPPTLQAVNSE TFSLMVDECFKEGKFDEAVETFRKAGTKAKSRPFAMDVAGYNNIIIRFSEREMMTEAEQFFTELMSKSLSPNVTSYKTLIEAYLKLERIDDALKIFDKMV DAGLWVVASFGTRVFGELIKNGKAVECAQIMIKMGTMMAEKMGERDVKPDSMIYDVVVRGLCDAGELDCSRDVIDQMMSYGVGIHPSLKEFARKAFGDAG RGQEIEKLLDENQYRNTQRPLFTGRQPQTLFGSEQFSGKSSTGVNSLFGQPRYQSPSAYSSAGQSASSSSQWTAQQSSLASQRWGRAPSESAPLQGQQPS WSSQNHQQFGSSPAQEQKPSWLSPKHQQSGQSTTQGQQPLWSSSNHQQSGSSPTQGQQPSWSSSNHQQSGSSPTQGQQPSWSSPTRGQQPSWSSPTQEQA ASWSPSMHGQNSSPSSPSQGQQPSWSSPTRGQQPSWSSPTQEQAASWSPSMHGQNSSPSSPSQGQQPSWSSPTRGQQPSWSSPTQEQAASWSPSMHGQNS SPSSPSQGQQPSWSSPTRGQQPSWSSPTQEQAASWSPSMHGQNSSPSSPSQGQQPSWSSPTRGQQPSWSSPTQEQAASWSPSMHGQNSSPSSPSQGQQPS WSSLASGLNSSQPSYASGQSFWSSRDAGQQQSSWSSPIGAHQSSGTQHTNRTYENASSWASYDSSEAPYVPAQNAGQPSSIASHVAGNHHPIGHLHVAGQ NHWQDSQQQFDPMARQQPGGHRQSPQWQGSHHSPVAGRDQWQGNQQQFDPMGGQQQQQQQTERPDNSNSRDSHLNGNSTASVPQLNYLVQSAVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	0	1
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	1.0	0.9564
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	4.9	0.9264
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	6.2	0.9254
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	6.6	0.9096
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	8.4	0.9183
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	9.2	0.9164
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	10.2	0.9226
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	11.7	0.9180
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10033287 [exp]	12.8	0.8971
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10007984 [exp]	13.8	0.8947

Compare expression of checked genes

Lus10024469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.