Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10270 170 / 3e-48 GRP23 glutamine-rich protein 23 (.1) AT3G60960 94 / 3e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49240 83 / 5e-18 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60980 61 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18530 56 / 7e-09 Protein of unknown function (DUF707) (.1) AT5G28340 55 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28380 55 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12840 52 / 7e-08 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G11170 50 / 7e-07 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G62914 48 / 3e-06 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024469 [exp] 239 / 1e-72 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10002990 [exp] 234 / 4e-71 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10018109 [exp] 81 / 2e-17 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022406 [exp] 81 / 3e-17 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002991 [exp] 77 / 2e-16 AT4G18530 265 / 6e-87 Protein of unknown function (DUF707) (.1) Lus10024473 [exp] 73 / 6e-16 AT4G18530 135 / 6e-39 Protein of unknown function (DUF707) (.1) Lus10029737 [exp] 56 / 7e-09 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 56 / 8e-09 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10015109 [exp] 49 / 2e-06 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227800 [exp] 185 / 2e-53 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.003G002950 [exp] 174 / 1e-49 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.012G015400 [exp] 77 / 6e-16 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G227700 [exp] 59 / 4e-10 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 57 / 2e-09 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.001G236800 [exp] 54 / 2e-08 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G175800 [exp] 52 / 9e-08 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.003G105700 [exp] 49 / 1e-06 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G053000 [exp] 49 / 1e-06 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.017G131400 [exp] 49 / 2e-06 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10024470 pacid=23170226 polypeptide=Lus10024470 locus=Lus10024470.g ID=Lus10024470.BGIv1.0 annot-version=v1.0 ATGTCTCTTTACCGTGTCCTCCTTCTCAACCGCTCCTCTTCCTCATCTGCCACCTCCTATGCGCCATCCTTAACGCGAGCCCTCCACTACTTCACCTCAC CACCCATCACCGCTTCCCTAATTCCCGCTCCTCAACTTTCAATCCCTTCATCGCGACGAAGTTTTGCCTTCTCCTCCGCTGAAGAAGCTGCCGCTGAACG CCGCCGGCGGAAACGGCGCCTCCGCATCGAACCTCCGCTGCACGCTCTTCAGCGTAACCCTTACCCTCCTCCTCGGGATCCCAATGCTCCCCGTCTTCCC GATTCCACTTCAGCTCTTGTTGGCCCTCGACTTAGCTTGCATAACAATGTCCAGTCGCTTATTAGAGCCTTTGATCTTGATGCTGCTTCTTACCTCGCTC GCACCGCTGTTTTCTCCAGAACTAGGCCCACTGTCTTCACATGTAATGCGATTATAGCTGCTATGTATCGAGCTAAACGGTACAGTGACGCCATTGCTTT GTTTAAGTACTTCTTCGAGCAAAATGATATAGTGCCTAATGTCGTCTCTTATAATAATGTGATCAACGCGCACTGTGATGAAGGGAGAGTTGATACAGGG CTTGAGTCTGTTGTTCGGGGTGACAGGGCGAAAAATGTCGGTGTGGTCGATTCTGAGTACATAGTACACCTTGGCTTGCCCACACTTGGTGTCTTCAACA AAACTCAGGCAAGTACAAGTAGCTCTTCTACCTAA
AA sequence Show only first row Show all	>Lus10024470 pacid=23170226 polypeptide=Lus10024470 locus=Lus10024470.g ID=Lus10024470.BGIv1.0 annot-version=v1.0 MSLYRVLLLNRSSSSSATSYAPSLTRALHYFTSPPITASLIPAPQLSIPSSRRSFAFSSAEEAAAERRRRKRRLRIEPPLHALQRNPYPPPRDPNAPRLP DSTSALVGPRLSLHNNVQSLIRAFDLDAASYLARTAVFSRTRPTVFTCNAIIAAMYRAKRYSDAIALFKYFFEQNDIVPNVVSYNNVINAHCDEGRVDTG LESVVRGDRAKNVGVVDSEYIVHLGLPTLGVFNKTQASTSSSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024470 [exp]	0	1
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	2.6	0.9337
AT5G35910			Polynucleotidyl transferase, r...		Lus10020301 [exp]	4.4	0.8942
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	8.5	0.9237
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	10.7	0.9150
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	10.9	0.9263
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	11.3	0.8975
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	13.0	0.9176
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	14.8	0.9162
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	17.2	0.8881
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	22.1	0.9103

Compare expression of checked genes

Lus10024470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.