Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11890 166 / 2e-51 adenylate cyclases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002992 [exp] 415 / 9e-149 AT2G11890 190 / 7e-61 adenylate cyclases (.1.2) Lus10008820 [exp] 182 / 4e-57 AT2G11890 198 / 4e-64 adenylate cyclases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198200 [exp] 282 / 6e-97 AT2G11890 176 / 1e-55 adenylate cyclases (.1.2) Potri.T125606 [exp] 281 / 1e-96 AT2G11890 175 / 1e-55 adenylate cyclases (.1.2) Potri.018G121300 [exp] 197 / 1e-63 AT2G11890 218 / 1e-72 adenylate cyclases (.1.2) Potri.006G062000 [exp] 182 / 1e-57 AT2G11890 212 / 8e-70 adenylate cyclases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain
Representative CDS sequence Show only first row Show all	>Lus10024472 pacid=23170239 polypeptide=Lus10024472 locus=Lus10024472.g ID=Lus10024472.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCAGTAGACAGACTATGACCAGCCCTTCCCCCTTGAAGAAATTCCCCACAGTTCTGAGTCCGGCGAGGTATTTCCCCTTCAAAAGCTTTT GTGCAGTTAAGGTGTTGGACGAAATGGAAGTGGAGGTGAAACTTCGACTCCCAGACGCAAGCTCCCACAATCGTCTCTCCGCCGTCCTCTCCCCCTACCG GACCAAAACCCTATCCCAAGAAAACATATTTTTCGACACTGCCAACTCCCACCTCGCCTCCAACCTTGCGGCCCTGCGGATCCGCTTCTACAACGTCGAT TCCAGCTGCGTTTTGTCCCTCAAGGCCAAGCCCGTCCTCGCCGATGGAATCAGCCGAGTGTCGGAGCAGGAAGAGCCTCTAGACCCTCAATTGGGTCGAC TGTGTGTTGGCGAGCCACGGCGGTTGATGGGTTTGCGGGATGGGTCGAATATTATGGAGAGAGTTAGAGAGGAGTATGGGGTGGTTGAAGAAGGGGCGTT AATCTGTCTTGGCGGGTTTAGGAATGTGAGGCAGGTGTTTGAGTGGAAAGGTTTGGTGTTGGAGCTTGACGAGACCATGTATGATTTTGGGACCAGTTAT GAGGTTGAGTGTGAAAGCAGTGAACCTGACAGGGACAAGAAGCTGATTGAGCAACTGTTGCAGGAAAATGGGATCCAGTTTTCTTACTCCACAGCCAACA AATTTGCAGTTTTTCGATCTGGGAAGTTGCCTTCGTAG
AA sequence Show only first row Show all	>Lus10024472 pacid=23170239 polypeptide=Lus10024472 locus=Lus10024472.g ID=Lus10024472.BGIv1.0 annot-version=v1.0 MAFFSRQTMTSPSPLKKFPTVLSPARYFPFKSFCAVKVLDEMEVEVKLRLPDASSHNRLSAVLSPYRTKTLSQENIFFDTANSHLASNLAALRIRFYNVD SSCVLSLKAKPVLADGISRVSEQEEPLDPQLGRLCVGEPRRLMGLRDGSNIMERVREEYGVVEEGALICLGGFRNVRQVFEWKGLVLELDETMYDFGTSY EVECESSEPDRDKKLIEQLLQENGIQFSYSTANKFAVFRSGKLPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	0	1
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	1.0	0.8927
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	2.8	0.8166
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	4.5	0.8261
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	8.1	0.7972
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	8.4	0.8157
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	9.0	0.8054
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	10.2	0.8255
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10006616 [exp]	11.7	0.7718
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	11.8	0.7956
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	11.9	0.7629

Compare expression of checked genes

Lus10024472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.