Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40860 390 / 5e-132 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT4G31750 172 / 2e-51 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 172 / 2e-50 Protein phosphatase 2C family protein (.1) AT5G53140 170 / 2e-49 Protein phosphatase 2C family protein (.1) AT5G10740 161 / 9e-47 Protein phosphatase 2C family protein (.1) AT1G43900 154 / 4e-44 Protein phosphatase 2C family protein (.1) AT2G25620 147 / 3e-41 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT1G07160 145 / 2e-40 Protein phosphatase 2C family protein (.1) AT3G62260 144 / 3e-40 Protein phosphatase 2C family protein (.1.2) AT1G67820 142 / 1e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002993 [exp] 588 / 0 AT2G40860 899 / 0.0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10020104 [exp] 170 / 2e-50 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 171 / 4e-50 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026908 [exp] 166 / 4e-49 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 164 / 3e-48 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10042430 [exp] 162 / 3e-48 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 162 / 3e-48 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042775 [exp] 154 / 1e-42 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10017106 [exp] 144 / 5e-40 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030800 [exp] 419 / 1e-143 AT2G40860 921 / 0.0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Potri.006G267600 [exp] 170 / 4e-51 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 169 / 2e-50 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.012G002100 [exp] 170 / 3e-50 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 168 / 1e-49 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 159 / 1e-46 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 152 / 4e-44 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.006G248400 [exp] 154 / 6e-44 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 151 / 7e-43 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 150 / 9e-43 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10024474 pacid=23170257 polypeptide=Lus10024474 locus=Lus10024474.g ID=Lus10024474.BGIv1.0 annot-version=v1.0 ATGAACCAAGATACTATTAACTGGTCCAATCAAGGAGAAAGAGTGTTAAAGGGAACCTCTTTTGCAGGCACTTCAGGTTCAGCAAATTGGATTGATTCCA GAACCAGTTCGTTGGAGTATCATCCAGTGCTTTCGTTGGGATCTTTTGCTTCTCGTGGAAGAAGGGAGACTATGGAGGATACTCATTTTATGATGCCCAA CTTCTGCAATGAAAAGTACGTCCATGTTTTTGGTATCTTTGATGGTCATAGAGGCGGAGCAGCAGCTGAATTTGCAGCTAAAGCTCTGCCGATCTATTTG CATAATCTAGGTTTGACAAACAGCCCTATAGATGCATTGTCCAAGTCATTTGTCGAAACAGATGTTGCATTTAGGAAGGAGCTGGATTCCCATCGCAGCT CAAGAAGTATTACAAAGAAAAATTGGCATCCTGGTTGCACTGCTATTGCTTGTTTGGTCGTTGGAAATAGACTGTTGGTTGCAAATGCTGGTGATTGCAG GGCAGTGTTGTGTCGAGCTGGTAATGCATTTCCTCTGACCGAGGACCACGTTCCTAGTAATCTTAAAGAGAGGGAAAGAGTTGTTAGTGCCGGTGGGGAA GTGAAATGGCAAGTGGATACATGGAGGGTTTGTCCTGCTGCACTTCAAGTTACTCGATCCATTGGTGACGACGATCTGAAGCCTGCTGTAACTGCAGAAC CAGAAGTGATAGAAATGATTCTGACGGAAGAGGCCGAGTTTCTTGTGATGGCAAGTGACGGACTGTGGGATTGTGTGAAGAATGATGAGGTTGTGAGCAT TATAAGGGACACAGTGAAAGAACCGACAATGTGCTCCAAGAGATTAGCAACAGAAGCTGGAGTAAGAGGAAGCAATGACAACATTATAGTCATTGTTGTA TTCCTGCGACCAGTGTCTACGGCAGAGCGAGTTTACTAG
AA sequence Show only first row Show all	>Lus10024474 pacid=23170257 polypeptide=Lus10024474 locus=Lus10024474.g ID=Lus10024474.BGIv1.0 annot-version=v1.0 MNQDTINWSNQGERVLKGTSFAGTSGSANWIDSRTSSLEYHPVLSLGSFASRGRRETMEDTHFMMPNFCNEKYVHVFGIFDGHRGGAAAEFAAKALPIYL HNLGLTNSPIDALSKSFVETDVAFRKELDSHRSSRSITKKNWHPGCTAIACLVVGNRLLVANAGDCRAVLCRAGNAFPLTEDHVPSNLKERERVVSAGGE VKWQVDTWRVCPAALQVTRSIGDDDLKPAVTAEPEVIEMILTEEAEFLVMASDGLWDCVKNDEVVSIIRDTVKEPTMCSKRLATEAGVRGSNDNIIVIVV FLRPVSTAERVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40860			protein kinase family protein ...		Lus10024474 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	1.7	0.7736
AT4G23730			Galactose mutarotase-like supe...		Lus10028739 [exp]	13.9	0.6740
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	14.5	0.7523
AT3G05170			Phosphoglycerate mutase family...		Lus10035350 [exp]	15.4	0.7220
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	17.2	0.7348
AT3G50910			unknown protein		Lus10025996 [exp]	18.1	0.7202
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	19.0	0.7253
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	25.8	0.7278
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	26.2	0.7255
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	34.0	0.7144

Compare expression of checked genes

Lus10024474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.