Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40860 344 / 8e-115 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT5G50000 89 / 5e-20 Protein kinase superfamily protein (.1) AT4G23050 89 / 1e-19 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 87 / 3e-19 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G01490 86 / 6e-19 Protein kinase superfamily protein (.1) AT1G67890 86 / 1e-18 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT1G62400 85 / 1e-18 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G24480 85 / 3e-18 Protein kinase superfamily protein (.1) AT3G46930 84 / 3e-18 Protein kinase superfamily protein (.1) AT5G58950 84 / 5e-18 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002993 [exp] 494 / 2e-173 AT2G40860 899 / 0.0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10026461 [exp] 92 / 8e-21 AT4G35780 179 / 7e-51 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 92 / 8e-21 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022227 [exp] 92 / 8e-21 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10025010 [exp] 92 / 8e-21 AT4G35780 178 / 1e-49 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10002374 [exp] 88 / 3e-20 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10000237 [exp] 88 / 3e-20 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10012517 [exp] 90 / 6e-20 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10002368 [exp] 89 / 9e-20 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030800 [exp] 298 / 1e-96 AT2G40860 921 / 0.0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Potri.005G190200 [exp] 99 / 6e-23 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 95 / 9e-22 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 94 / 1e-21 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.006G222600 [exp] 94 / 2e-21 AT4G35780 175 / 1e-48 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.015G074400 [exp] 90 / 3e-20 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.007G060600 [exp] 90 / 6e-20 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 89 / 7e-20 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 89 / 9e-20 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.001G351300 [exp] 88 / 1e-19 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024475 pacid=23170258 polypeptide=Lus10024475 locus=Lus10024474.g ID=Lus10024475.BGIv1.0 annot-version=v1.0 ATGGGTTTGCAGATCGCGGAGCCAAACTCTTGCATTAGAGGATGCTGCAGCAGCGATTCAATCCCGCTTCATCTACCAACTTCTTCTTACACTCTCTTAT CTCCGATTGCCAGAGGAGCTGAGAGCGTGGTATATGAAGCAATCTTGAACGATGTTAAAGTTGCTGTGAAGAAACCTATCTTGTCTACTTCTGATCACAT TGATAAGTTCCACAAAGAGCTGCAACTATTGTGTACATTTGACCTTCCAGGGATATCGAGGCATGTGAAACCTGCAAACATGCTTCTAGATGAGAACCTT TATCCCCACCTTGCCGACTTTGGCCTGGCAGAGTACAAGAATAACCTTAAGCAAGTCACTTTAGACAACTGGAGATCTTCGGGGAAGCCTACTGGTGGGT TTCATAAAAAGAATATGGTTGGTACGCTTATTTATATGGCCCCTGAAGTATTGAGGAAGGAGGTTCAGACTGAGAAATCAGATGTTTATAGCTTTGGGAT ATCCATCAACGAGCTTCTTACTGGTGTCGTCCCGTATACTGATCTTCGTGCAGAGGCTCAAGCCCACACTGTCTTGGAAATGAACTATACGGAGCAGCAA CTTACAGCCGCTGTGGTATCTGGTAAATTGAGACCTGCTCTTGCAATTTCTGAGTCAGGTGCATCACCAAGTCTTCTTTTTTTAATACAGAGATGCTGGG ATGACAATCCTGATCGTAGACCTTCTTTTGATGAAATAGTTGTAGAACTAGACACAATGATAGGTCAGGAACTGGTCCAAGCGAACCATGTCTGTGATAT GGCTTCTGATTCTACCAGGGATAAAGCGAAAGGCACCATAATGAACCGAAAGGCACCATAA
AA sequence Show only first row Show all	>Lus10024475 pacid=23170258 polypeptide=Lus10024475 locus=Lus10024474.g ID=Lus10024475.BGIv1.0 annot-version=v1.0 MGLQIAEPNSCIRGCCSSDSIPLHLPTSSYTLLSPIARGAESVVYEAILNDVKVAVKKPILSTSDHIDKFHKELQLLCTFDLPGISRHVKPANMLLDENL YPHLADFGLAEYKNNLKQVTLDNWRSSGKPTGGFHKKNMVGTLIYMAPEVLRKEVQTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQ LTAAVVSGKLRPALAISESGASPSLLFLIQRCWDDNPDRRPSFDEIVVELDTMIGQELVQANHVCDMASDSTRDKAKGTIMNRKAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10024474 [exp]	1.7	0.7736
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	7.9	0.7798
AT1G02420			Pentatricopeptide repeat (PPR)...		Lus10026306 [exp]	7.9	0.6940
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	9.4	0.7754
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	17.3	0.7321
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	19.1	0.7638
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	20.2	0.7102
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10019041 [exp]	22.8	0.7044
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	23.7	0.7273
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	25.6	0.7414

Compare expression of checked genes

Lus10024475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.