Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10830 370 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G22530 335 / 8e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61210 290 / 3e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G55450 291 / 9e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G54150 290 / 3e-98 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41380 208 / 9e-67 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002994 [exp] 513 / 0 AT5G10830 365 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001155 [exp] 201 / 5e-64 AT2G41380 330 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G103200 [exp] 406 / 5e-145 AT5G10830 376 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G066200 [exp] 335 / 5e-117 AT5G10830 339 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G101800 [exp] 326 / 3e-113 AT4G22530 331 / 3e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G067500 [exp] 322 / 1e-111 AT5G10830 326 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103400 [exp] 312 / 1e-107 AT4G22530 317 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G042200 [exp] 197 / 1e-62 AT2G41380 342 / 1e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G039051 [exp] 167 / 2e-51 AT2G41380 272 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10024476 pacid=23170184 polypeptide=Lus10024476 locus=Lus10024476.g ID=Lus10024476.BGIv1.0 annot-version=v1.0 ATGGCTGGGCTATTCGACAAGCAATCGGATCTGTACCTGGACGCCAGACCCACTTACCCATCGGAATGGTACTCCATGCTCGCCTCTCAATCCCTCCGCC ACTCTCTTGCTTGGGACGTCGGCACCGGCAACGGCCAGGCCGCCATCGGCGTGGCGGAGCACTACGATCAAGTGATCGGAACAGACGCCAGCTCAGCTCA GCTCAGCCGGGCAATCCCGCACCCGAGAGTCCAATACATCCACACTCCAGTCTCTCTGCCGGACGACGAACTCGTCGCTCTCGTCGGCGGAGAGAATTCG GTGGATCTGGTGACGGTGGCGCAGGCCGTCCACTGGTTCGACCTCCCGAGGTTCTATTCCGTTGTGAGCAGGGTGGTGAGGAAGCCCGGCGGAGTAATCG CGGTGTGGTGCTACAACGATCTGGTGGTGAGCCCGGAGTTCGACTCGGTGTTTAAGAAATTCCACGACACTACGCTGCCGTTTTGGCATCCGGATATCCG GCACGTGTTCGAGGGCTACCGGAATCTCCCTTTCCCTTTCGAAGCGGTGGGAGGAGGGCGGGCATCTCCGAAGGAGGTGGAAATCCCGAAGGAGATGTCG ATTGAAGGAGTGGTGAAGATGGTGCAATCCTGGTCCGCCGTGATTACGGCCAGGGATCGAGGCGTGGAATTGCTGCCGGAAAGTGTTGTGAAGGAAATGG AGATTGCTTGGGGCGGGCCGGGTTTGGTGAAGTCCATTGCTTACAAGGCCTTTATGCTCGTCGGTAAGGTCAACAACCCCTGA
AA sequence Show only first row Show all	>Lus10024476 pacid=23170184 polypeptide=Lus10024476 locus=Lus10024476.g ID=Lus10024476.BGIv1.0 annot-version=v1.0 MAGLFDKQSDLYLDARPTYPSEWYSMLASQSLRHSLAWDVGTGNGQAAIGVAEHYDQVIGTDASSAQLSRAIPHPRVQYIHTPVSLPDDELVALVGGENS VDLVTVAQAVHWFDLPRFYSVVSRVVRKPGGVIAVWCYNDLVVSPEFDSVFKKFHDTTLPFWHPDIRHVFEGYRNLPFPFEAVGGGRASPKEVEIPKEMS IEGVVKMVQSWSAVITARDRGVELLPESVVKEMEIAWGGPGLVKSIAYKAFMLVGKVNNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	0	1
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	1.7	0.9630
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	2.4	0.9550
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	2.8	0.9582
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	3.9	0.9529
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	4.5	0.9444
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	4.9	0.9507
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	4.9	0.9546
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	5.3	0.9477
AT1G52140			unknown protein		Lus10006040 [exp]	5.7	0.9451
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	6.9	0.9358

Compare expression of checked genes

Lus10024476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.