Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1004 / 0 ERD (early-responsive to dehydration stress) family protein AT1G11960 1003 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 979 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT3G21620 969 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 963 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 921 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 918 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G32090 795 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 377 / 5e-120 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 338 / 4e-105 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002996 [exp] 1383 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10020032 [exp] 1109 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 1099 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10030024 [exp] 1001 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 999 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 939 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 937 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 838 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 359 / 7e-113 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009900 [exp] 1042 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 1036 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1026 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 1013 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 998 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 994 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.001G133800 [exp] 821 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 815 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 375 / 6e-119 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 372 / 6e-118 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10024477 pacid=23170213 polypeptide=Lus10024477 locus=Lus10024477.g ID=Lus10024477.BGIv1.0 annot-version=v1.0 ATGGCCACGCTGGGAGACATCTCTGTTTCGGCAGCCATAAATCTCTTGACCGCCTTCATTTTCCTCTTAGCATTTGCATTGTTGAGACTTCAGCCCATCA ACGACCGTGTCTACTTCCCCAAATGGTACCTCAAGGGGCTCCGCCACACCCCGACCAATGCAGGAGGCGCTTTCGTGACCCGATTTGTGAACTTGAATTT GGGGTCTTACGTCCGCTTCCTAAACTGGATGCCCGATGCCCTCAAGATGCCAGAGTCGGAGCTTATCCAACACGCTGGCCTCGACTCCGCTGTCTACCTG CGCATTTACCTCATGGGACTTAAGATCTTTGTTCCCATCTCGTGTGTCGCCTGGTTGGTACTCGTCCCTCTTAACTGGACTAACCACACCATTGCAAAAG TCGCCAATGTCACTGCCAGCAACATCGACGAGCTCTCCATCTCCAATCTTCCACTTCAATCCAAACGATTTTGGGCGCATATACTGATGGCTTATGCATT CACGTTTTGGACATTGTTCATATTGTTCAAGGAGTATGCACAAGTTGCTTCAATGCGACTGCAGTTCCTTACCTCCGAGGAACGCCGCCCAGATAAATTC ACGGTTCTGGTTAGAAATGTGCCATCTGAACCTCAAGAAACGATGAGTGAGCATGTGGAACACTTCTTTGTGGGGAACCATCCGGATCACTATCTCACCA ATCAGGTGGTATACGACGCAAACAAGCTTGCAAGTTTGGTGAAGAAGAAGAAAAACATGCGGAACAAGCTTGATTTTTACCAACTTAAGCTTTCCAGGAA ACCCGCAATACGCCCTTCCTTTAAGACCGGTTTTCTGGGACTTCGGGGCAGAAAACTCGATGCTATTGATCATTACACTTCCATGGTCGACAAGTTATCA ATTCAAATAGAAGAAGAAATGGAAAGAGTTACCAAGGATCCGAACTGTATAGTTCCAGCGGCTTTCGTATCGTTCAAAACCAGATGGGGTGCAGCTGTAT GTGCACAGACTCAACAATCAAGAAATCCAACACTGTGGTTAACCGAATGGGCTCCAGAACCTCGCGACGTATACTGGAAAAACCTGACCATTCCTTACAT GTCCCTCAAAATCAGGAGGCTGGCAGTTGGGTTTGGATTCTTTCTCCTTACCTTCTTCTTCATGATCCCAATTGCGTTTGTGCAATCTCTGGCAAGCATT GAAGGCATTGAGAAGGCTGCACCCTTTCTCAAACCCATGATCGAAACGAAACTGATAAAATCGGTTATCCAAGGTGTCCTACCAGGAATTGTGCTGAAAC TATTCCTCATCTTCCTACCAACAATACTGATGATCATGTCTAAACATGAAGGATTCATTTCTCTGTCCTCTCTAGAAAGGAGATCAGCAACCAGATACTA CATATTCAACATTGTCAATGTCTTCCTTGGCAGCATTATCACAGGAACAGCATTTGAGCAGCTCAATTCCTTTATGAAGCAATCCGCTGGCGAAATCCCA AAGACAATTGGTATGGCGATTCCAATAAAAGCAACATTCTTCATCACCTACATAATGGTAGACGGGTGGGCTGGTGTGGCAGGGGAGATCTTAATGCTGA AGTCGTTGATAATCTTCCACTTGAAAAACTTTCTAGTGAAGACTGACAAGGATATGGAAGAGGCCATGGACCCAGGGAGCCTAGGATTTCACATAGGGGA GCCGCGAATACAGTTCTACTTCTTGTTGGGGTTTGTGTACGCAACGGTCACCCCGGTGCTCCTCCCATTCATCATAGTCTTCTTTGCCTTCGCCTATGTC GTGTTCCGCCATCAGATTATAAACGTATATAATCAAGCCTACGAGAGTGGGGCAGCATTCTGGCCAGCGGTGCACGGGCGTGTTCTTATAGCACTGGTGA TATCGCAGTTGCTGATGATGGGACTTTTGAGCACCAAGGGAGCTGTTCTTGCAACTCCATTTCTTATCGCTCTTCCCGTGCTCACGCTTTGGTTCTACAA ATTTTGCAAGTCACGATACGAATCAGCATTTACTATATACCCGTTGCAGGAAGCGATGTTGAAGGACACGTTGGATCGTGCGATGGAGCCTGAGCTGAAC CTGAAAGCGTATCTGCAGGAGGCTTACGTGCATCCCATTTTTAAGAGCGCAGATGACTATGGTTGTTCGACCGATGATAATGAGAAAGAAGATGAGGATG AGGAGGTGATGGTGGATATAAAGTTGGGTAACTCCGGTGATATCGAGATGGGGATAGTGCCTACAAAGCGCAAATTAAGGAATACTACTCCACCCTTAGC AGCGGAGGAGAGGAGTTATGGGAAGGGAGGCCCTCCTGAACGATAA
AA sequence Show only first row Show all	>Lus10024477 pacid=23170213 polypeptide=Lus10024477 locus=Lus10024477.g ID=Lus10024477.BGIv1.0 annot-version=v1.0 MATLGDISVSAAINLLTAFIFLLAFALLRLQPINDRVYFPKWYLKGLRHTPTNAGGAFVTRFVNLNLGSYVRFLNWMPDALKMPESELIQHAGLDSAVYL RIYLMGLKIFVPISCVAWLVLVPLNWTNHTIAKVANVTASNIDELSISNLPLQSKRFWAHILMAYAFTFWTLFILFKEYAQVASMRLQFLTSEERRPDKF TVLVRNVPSEPQETMSEHVEHFFVGNHPDHYLTNQVVYDANKLASLVKKKKNMRNKLDFYQLKLSRKPAIRPSFKTGFLGLRGRKLDAIDHYTSMVDKLS IQIEEEMERVTKDPNCIVPAAFVSFKTRWGAAVCAQTQQSRNPTLWLTEWAPEPRDVYWKNLTIPYMSLKIRRLAVGFGFFLLTFFFMIPIAFVQSLASI EGIEKAAPFLKPMIETKLIKSVIQGVLPGIVLKLFLIFLPTILMIMSKHEGFISLSSLERRSATRYYIFNIVNVFLGSIITGTAFEQLNSFMKQSAGEIP KTIGMAIPIKATFFITYIMVDGWAGVAGEILMLKSLIIFHLKNFLVKTDKDMEEAMDPGSLGFHIGEPRIQFYFLLGFVYATVTPVLLPFIIVFFAFAYV VFRHQIINVYNQAYESGAAFWPAVHGRVLIALVISQLLMMGLLSTKGAVLATPFLIALPVLTLWFYKFCKSRYESAFTIYPLQEAMLKDTLDRAMEPELN LKAYLQEAYVHPIFKSADDYGCSTDDNEKEDEDEEVMVDIKLGNSGDIEMGIVPTKRKLRNTTPPLAAEERSYGKGGPPER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	0	1
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	4.5	0.8570
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	4.9	0.8986
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10005484 [exp]	7.5	0.8203
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	8.7	0.8591
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	8.8	0.8683
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	11.5	0.8475
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	13.5	0.8294
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	15.7	0.8415
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	17.0	0.8131
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	17.2	0.8480

Compare expression of checked genes

Lus10024477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.