Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11950 182 / 8e-55 Protein of unknown function (DUF1191) (.1) AT4G22900 178 / 4e-53 Protein of unknown function (DUF1191) (.1) AT1G62981 166 / 2e-48 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT3G08600 81 / 5e-17 Protein of unknown function (DUF1191) (.1) AT4G01140 61 / 2e-10 Protein of unknown function (DUF1191) (.1) AT4G23720 46 / 2e-05 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002998 [exp] 396 / 2e-138 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 231 / 4e-74 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 229 / 2e-73 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 199 / 3e-61 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 195 / 6e-60 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 191 / 7e-59 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 186 / 1e-57 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10007859 [exp] 45 / 3e-05 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10003033 [exp] 44 / 0.0001 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 245 / 2e-79 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 226 / 3e-72 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 111 / 5e-28 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 84 / 2e-18 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 78 / 4e-16 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 75 / 3e-15 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 73 / 2e-14 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 71 / 1e-13 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10024479 pacid=23170232 polypeptide=Lus10024479 locus=Lus10024479.g ID=Lus10024479.BGIv1.0 annot-version=v1.0 ATGTCGAATCTTTACTCTTTCGTCCTCTTAACCCTTGTGTCCTTGTCATCACCACTGCCATCAGCATCAACATCGACCCCGGAGGCCCTGGATCTCTTAA TCAGGGACTACACATTCAAGTCCTACGACAACATTACTACCAAAACAGGGTATATACACAATGTCAACCTCCCGCTTAACCTCTCCGGCATCACGGCTCA TGCAGTTAGGTTCCGATGTGGCAGCCTGAGCCGATATGGTGCCCAAATCGACGGCTTCACCCTTGGACGTGACAACAACAACAGCCTCATTGTCTCCCCC TGCGTGGAAAGGGTGATGCTGATCACAACCAACTTGGGTCTCAATTGGTCATCCACCAGTTATAACAACCACCTCCTCTCTGGCTACAAACTCGTCTCCC CAATTCTAGGCCTGACCGCATACGACGCCGGATCCAAAACGAGCTACCCTTTTGAGATTGGAATCCGTTCTAGCCGCGGAAACCCCATAATCACGGTCAA TTTCACCAACGTACTAACTGATGATTATAATCTCAACACTACCAGCTCTCCACTATGTGCCATATTTGCTAGAGATGGGAAATTCAGCCTGAAACCACCA ACTTCACCCCGACTCTGTTCCTCAACAACCACTGGCCATTTTGGGTTGGTGGTGAAGGATTTGGTGCCGCTGCCACCAAATCCCTCACCGGCGGGAGAAG GAGATGATGAAGGAGGAGGAGGCAGAGCAGCAGCGTGGAAAGTGGCGTTGGAGAGCAGTATTGGGGGAGTGATGGGGATAGTGTTGCTGGGTTTGCTAAT GGTGGCCATGTTTGGGAAGGCAAAGAAGAAAGCGAAGATGGTGGAGTTGCAGAGAAAGGCGTATGAAGAGGAAGCTCTGCAGGTATCCATGGTTGGACAT GTTATAAGAGCTCCTCTGGCTTCCAGCTGCACACGTACCGTTCCCACCATTGACAATGATCATCACTTCGTGCCTAATTACATTAATCCTTCTTCTCGAG CCAAAAAGTAA
AA sequence Show only first row Show all	>Lus10024479 pacid=23170232 polypeptide=Lus10024479 locus=Lus10024479.g ID=Lus10024479.BGIv1.0 annot-version=v1.0 MSNLYSFVLLTLVSLSSPLPSASTSTPEALDLLIRDYTFKSYDNITTKTGYIHNVNLPLNLSGITAHAVRFRCGSLSRYGAQIDGFTLGRDNNNSLIVSP CVERVMLITTNLGLNWSSTSYNNHLLSGYKLVSPILGLTAYDAGSKTSYPFEIGIRSSRGNPIITVNFTNVLTDDYNLNTTSSPLCAIFARDGKFSLKPP TSPRLCSSTTTGHFGLVVKDLVPLPPNPSPAGEGDDEGGGGRAAAWKVALESSIGGVMGIVLLGLLMVAMFGKAKKKAKMVELQRKAYEEEALQVSMVGH VIRAPLASSCTRTVPTIDNDHHFVPNYINPSSRAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	0	1
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	2.4	0.9351
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	6.9	0.9399
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	8.4	0.9258
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	9.9	0.9350
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	11.5	0.9048
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	14.4	0.9136
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026656 [exp]	14.7	0.9315
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	15.4	0.9269
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	17.4	0.9170
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	18.0	0.9011

Compare expression of checked genes

Lus10024479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.