Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033176 [exp] 54 / 4e-09 ND / Lus10011663 [exp] 44 / 9e-06 ND / Lus10012430 [exp] 42 / 6e-05 ND / Lus10015043 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024480 pacid=23170238 polypeptide=Lus10024480 locus=Lus10024480.g ID=Lus10024480.BGIv1.0 annot-version=v1.0 ATGGCACCAAGGAGAAGGAATCAGGAAGGTGATCTTCCACAACCTTTTGTGGAAGACGAGCTAGTGGCTGGCGGTCATGATGGCCATGGACAAAGTTCTA GCAATCTTGCTAGAGAAGAGGTTCCTCTCTTTTCTTGTTTCTTTTCTTCTCTTCCTCTTCCTCTTCTTATATCCTCTTTGTCCCCTCACTGTTCCCTCTC TGCTTCAGCTAGCGGCGGCATCGACGCCTTTGCTTCTGCTTCTTTCCTCATAGCGGGGCAATGGGATGCTGCCGCCGCCTCCCTCATCGACAACAAAGAA GAAAACGAAAAGGGAAGAAAAGACGATCCCATCACTCACGACGTGAACAGCGGCTTTGGTGAAGCGTCAGACAGAGAGAAATGGAAACAAACAAGGAGAG AAAAAAAACTATGTTCTGTTTTTTTTATTAATCTATGTATAGCTGATAGCAAACTAATAACGATTGTTTTTGTTTTCTCCAGGTCTACGAAAATAGATAG ATTCAACATGCTCGAGAAAGTCGGGAGGAAAGGGAACGGCTACCTCTGA
AA sequence Show only first row Show all	>Lus10024480 pacid=23170238 polypeptide=Lus10024480 locus=Lus10024480.g ID=Lus10024480.BGIv1.0 annot-version=v1.0 MAPRRRNQEGDLPQPFVEDELVAGGHDGHGQSSSNLAREEVPLFSCFFSSLPLPLLISSLSPHCSLSASASGGIDAFASASFLIAGQWDAAAASLIDNKE ENEKGRKDDPITHDVNSGFGEASDREKWKQTRREKKLCSVFFINLCIADSKLITIVFVFSRSTKIDRFNMLEKVGRKGNGYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024480 [exp]	0	1
					Lus10004769 [exp]	1.0	0.9270
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	2.4	0.9234
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	2.8	0.8212
					Lus10028109 [exp]	4.0	0.8591
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	4.9	0.8630
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	6.0	0.8263
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	8.4	0.8245
					Lus10013650 [exp]	8.7	0.8273
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	9.0	0.8100
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	11.2	0.7691

Compare expression of checked genes

Lus10024480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.