Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11950 155 / 1e-45 Protein of unknown function (DUF1191) (.1) AT1G62981 155 / 1e-45 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT4G22900 144 / 2e-41 Protein of unknown function (DUF1191) (.1) AT3G08600 82 / 4e-18 Protein of unknown function (DUF1191) (.1) AT4G01140 64 / 1e-11 Protein of unknown function (DUF1191) (.1) AT4G23720 51 / 2e-07 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001191 [exp] 377 / 1e-132 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 271 / 5e-92 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 245 / 9e-81 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10024479 [exp] 201 / 2e-63 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 189 / 7e-59 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10002998 [exp] 187 / 9e-58 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 172 / 1e-52 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 67 / 5e-13 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10028743 [exp] 66 / 3e-12 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 196 / 5e-62 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 190 / 2e-59 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 89 / 1e-20 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 79 / 3e-17 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 78 / 9e-17 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 70 / 5e-14 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 69 / 1e-13 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 65 / 2e-12 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10024481 pacid=23170201 polypeptide=Lus10024481 locus=Lus10024481.g ID=Lus10024481.BGIv1.0 annot-version=v1.0 ATGGTCAATCTTTACTCTTTAGCCTGCATAACCATTCTCCTAACACTGTCATCATCAATACGAGCTCAGAATGAGATCAGAACACCAGAACAGCTGGATC TGTTTATTAGGGACTCCACTTTCAAGTCCATAGGCAGGATGAGCAAGATCAAAACTGGAGAAATCTACAATGTGGACCTCCCGGCTAACCTATCCGGCAT CACTGCTCATGCAGGGAGGTTCCGGTGTGGAAGCCTGAAGCGGTATGGCACCCGGATCCAAGAACTTGGCCTGGGAATCGGCCTCACCCTCCTGCCATGT TTGGTCAGAGTGATGGTCATTACACAGAGTTTGGGGCTTAATTGGTCATACATCTACACTGCAAACTACGACCTCTCTGGCTATCAACTAGTGTCCCCAA TTCTTGGCCTTAAGGCCTATGATTATAATTCCAACTGGGAAAACAGCAGTATCCCCGACCCTTTTGAGGTTGCAATCGGTTCTAGTCAAGGAAATTCCAT CACCATCAATTTCGGCAGCACGGCTAACGGCAGCGAAAACCCCCTTTGTGCCATATTTGAGAAAGATGGGAAAGTGAGCATGAAACCCCCAGTGTCACCT CAAGTATGTGCATCAACATCTAATAATGGCCATTACGGGTTGGTGGTACGATTGCCGCCGCAGTCTACACCACCGCCTGCTCCCCCACAATGTGAGGGCA CCTGTGGCTACCGGCACTAG
AA sequence Show only first row Show all	>Lus10024481 pacid=23170201 polypeptide=Lus10024481 locus=Lus10024481.g ID=Lus10024481.BGIv1.0 annot-version=v1.0 MVNLYSLACITILLTLSSSIRAQNEIRTPEQLDLFIRDSTFKSIGRMSKIKTGEIYNVDLPANLSGITAHAGRFRCGSLKRYGTRIQELGLGIGLTLLPC LVRVMVITQSLGLNWSYIYTANYDLSGYQLVSPILGLKAYDYNSNWENSSIPDPFEVAIGSSQGNSITINFGSTANGSENPLCAIFEKDGKVSMKPPVSP QVCASTSNNGHYGLVVRLPPQSTPPPAPPQCEGTCGYRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	0	1
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	1.7	0.9153
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	3.5	0.9013
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	3.5	0.8900
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	4.0	0.9129
AT5G07900			Mitochondrial transcription te...		Lus10040819 [exp]	4.0	0.8719
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	7.7	0.8861
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	8.5	0.8477
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10016972 [exp]	8.9	0.8672
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	9.0	0.8679
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	9.2	0.8720

Compare expression of checked genes

Lus10024481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.