Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22910 684 / 0 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G11920 662 / 0 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G13840 478 / 5e-166 FZR3 FIZZY-related 3 (.1.2) AT4G33270 308 / 6e-100 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 308 / 7e-100 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27570 299 / 7e-97 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G26900 294 / 1e-94 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 292 / 2e-93 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 247 / 1e-76 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 71 / 7e-13 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001192 [exp] 853 / 0 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10040282 [exp] 489 / 3e-166 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10023401 [exp] 345 / 3e-114 AT5G13840 546 / 0.0 FIZZY-related 3 (.1.2) Lus10037593 [exp] 315 / 1e-102 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 309 / 3e-100 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 313 / 2e-97 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 285 / 4e-91 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 273 / 6e-87 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 273 / 4e-86 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119500 [exp] 747 / 0 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.001G112700 [exp] 728 / 0 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.010G202100 [exp] 503 / 2e-175 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 483 / 5e-168 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.016G118400 [exp] 324 / 5e-106 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 320 / 2e-104 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 316 / 9e-103 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 315 / 1e-102 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 279 / 1e-88 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G060500 [exp] 76 / 3e-14 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10024482 pacid=23170196 polypeptide=Lus10024482 locus=Lus10024482.g ID=Lus10024482.BGIv1.0 annot-version=v1.0 ATGGCTACCCGCAAATTGGCATCGCCAGCGCAGTCCTCCTCTTCCTCCCAGCTAAATCTCCCATCCACAATGCCACGCCCTTCTCTGAATCTCGAAACCC TAACCCCACTCCCTTCCTCCTCCTCTGACCATGTCAAGCGTCTCATTAACTCAAAGCATTACGTCTCTCCTTCCAAGACTATCTACTTCGACAGATTCAT CCCCAGCAGATCCGGTTCAAACTTCGATCTTTTCCATATATCCTCCTCCTCCTCCTCTTCATCTTCGCCGTCTCCGTCCTCTTCTTCTTCCGCGGTGTCC AATTCTAATTCTTCTCCGTCGCCCGCCAACATCGACGGTGGCAAAGAGGAGAGCCCCAGTGCTTATGCCATTCTTCTCCGGGATGCCCTCTTCGGGACGA ATACGCCGGACAAGAGGGATTGCCCTGCACGCAATATTTTCCGGTACAAAACGGAGACTAAGCAGTCAATGCAGTCTCTGTCACCTTTTGCTTTTGATGA TGCAGGGCCTGGAGTTAGTCATAGCCCCGTTAAGGCTCCACGAAAGGTGCCCAGATCACCTTATAAGGTGTTAGATGCGCCTGCATTGCAAGATGATTTC TATTTGAACTTAGTGGACTGGTCATCACATAATGTGCTAGCGGTTGGGCTGGGAAACTGTGTATACTTGTGGAATGCTTGTAGTAGCAAGGTGACGAAGC TGTGTGATTTAGGAATCGATGACAGTGTGTGCTCTGTCGGATGGGCACAACGTGGCACGCACAATCTTGCTGTTGGAACTTTTAATGGGAAAGTCCAGAT TTGGGATGCATCTCGTTGCAAGAAAATAAGAGACATGGAGGGTCATCGACTAAGGGTTGGTGCTCTTGCGTGGAGCTCATCTGTCTTGTCCTCTGGTAGC AGGGATAAGAGTATACTTCAAAGAGATATACGTGCTCCTGAAGACTTTGTTAGCAAGTTGTCAGGTCATAAATCTGAGGTCTGTGGTCTAAAGTGGTCCT ATGACAACCGTCAATTAGCATCAGGTGGAAACGACAACAGGCTTTTTGTTTGGAATCAACATTCAACCCAGCCAGTACTGAAATACTGTGAGCATACGGC AGCTGTAAAGGCGATAGCTTGGTCCCCCCATCTTCATGGACTTCTTGCTTCTGGGGGTGGCACTGCTGATCGGTGCATACGGTTCTGGAACACAACCACT AACTCACATCTTAGCTGCATGGACACCGGTAGTCAGGTGTGCAATCTTGTATGGTCTAAGAATGTGAACGAAATTCTGAGCACCCATGGATACTCCCAAA ACCAGATAATCGTATGGAGGTATCCAACCATGTCAAAGTTGGCTACTCTTACGGGTCATACATACAGAGTACTCTATCTTGCCATCTCGCCAGATGGACA GACAATCGTGACTGGAGCGGGTGATGAAACACTGAGGTTCTGGAATGTATTCCCTTCCCCTAAATCTCAGAACTCTGACAGCGAAATTGGAGCATCGTCG CTAGGAAGAACAACTATTCGGTGA
AA sequence Show only first row Show all	>Lus10024482 pacid=23170196 polypeptide=Lus10024482 locus=Lus10024482.g ID=Lus10024482.BGIv1.0 annot-version=v1.0 MATRKLASPAQSSSSSQLNLPSTMPRPSLNLETLTPLPSSSSDHVKRLINSKHYVSPSKTIYFDRFIPSRSGSNFDLFHISSSSSSSSSPSPSSSSSAVS NSNSSPSPANIDGGKEESPSAYAILLRDALFGTNTPDKRDCPARNIFRYKTETKQSMQSLSPFAFDDAGPGVSHSPVKAPRKVPRSPYKVLDAPALQDDF YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHNLAVGTFNGKVQIWDASRCKKIRDMEGHRLRVGALAWSSSVLSSGS RDKSILQRDIRAPEDFVSKLSGHKSEVCGLKWSYDNRQLASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT NSHLSCMDTGSQVCNLVWSKNVNEILSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNSDSEIGASS LGRTTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	2.0	0.8772
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	4.9	0.8462
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	7.7	0.8300
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10005795 [exp]	7.9	0.7962
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	14.9	0.7651
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	16.2	0.8102
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	17.0	0.7725
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	17.4	0.7867
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	22.2	0.7585
AT5G07740			actin binding (.1)		Lus10017556 [exp]	28.5	0.8081

Compare expression of checked genes

Lus10024482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.