Gene [FLAX] | FIBexDB

Lus10024483 [FLAX]

External link

JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

Show only best Show top 10

No hit found

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10007673 [exp]	64 / 7e-13	AT4G32700	313 / 6e-94	TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Lus10017808 [exp]	62 / 8e-13	ND	/
Lus10021849 [exp]	62 / 2e-12	AT4G23160	138 / 1e-34	cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Lus10022122 [exp]	61 / 6e-12	ND	/
Lus10009687 [exp]	56 / 2e-10	ND	/
Lus10015964 [exp]	55 / 9e-10	ND	/
Lus10002471 [exp]	39 / 0.0002	ND	/
Lus10023769 [exp]	37 / 0.0005	ND	/

Poplar homologues

Show only best Show top 10

No hit found

PFAM info

Representative CDS sequence

Show only first row Show all

>Lus10024483 pacid=23170208 polypeptide=Lus10024483 locus=Lus10024483.g ID=Lus10024483.BGIv1.0 annot-version=v1.0

ATGCCACAAACTTCTGCGGGGTTTACGGGTCGCCTTGCTCTGGGACAGTTATTAACATCTAACAGTTCTCCGGCCAACTCTGTTGATAGTTACCGTCGAC

TAACAAAGCTTCCAGACAACATAGGGGAATCGATTACCTTTCGAGAACTAAAAGAATGGTTGAAAGATATGGAGAAATTGAGGAACCTGACCACACTACA

ATTGCTTGAACGGAAAGCAAGCGTCGTAGCCAACACATTGGTTGTTTCTGCTCAACAGGCAGCATTAAAAGCACAGGAAACAACGTTGTTGGCTCAAGAA

GCAACCCTTCAGAAGGAAATGAAGGAAGTATAG

AA sequence

Show only first row Show all

>Lus10024483 pacid=23170208 polypeptide=Lus10024483 locus=Lus10024483.g ID=Lus10024483.BGIv1.0 annot-version=v1.0

MPQTSAGFTGRLALGQLLTSNSSPANSVDSYRRLTKLPDNIGESITFRELKEWLKDMEKLRNLTTLQLLERKASVVANTLVVSAQQAALKAQETTLLAQE

ATLQKEMKEV

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024483 [exp]	0	1

Lus10024483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.