Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22920 336 / 1e-116 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11910 319 / 7e-110 SGR2, STAY-GREEN2 unknown protein AT4G11911 303 / 3e-103 unknown protein AT1G44000 177 / 4e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001194 [exp] 524 / 0 AT4G22920 350 / 7e-122 non-yellowing 1 (.1) Lus10029738 [exp] 176 / 2e-53 AT1G44000 269 / 1e-90 unknown protein Lus10042769 [exp] 172 / 2e-52 AT1G44000 247 / 2e-82 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119600 [exp] 367 / 2e-128 AT4G22920 352 / 4e-123 non-yellowing 1 (.1) Potri.001G112600 [exp] 352 / 6e-123 AT4G22920 336 / 7e-117 non-yellowing 1 (.1) Potri.002G075700 [exp] 190 / 1e-59 AT1G44000 259 / 2e-87 unknown protein Potri.005G184700 [exp] 188 / 1e-58 AT1G44000 279 / 8e-95 unknown protein Potri.001G112500 [exp] 56 / 1e-09 AT4G22920 50 / 6e-08 non-yellowing 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024484 pacid=23170197 polypeptide=Lus10024484 locus=Lus10024484.g ID=Lus10024484.BGIv1.0 annot-version=v1.0 ATGGGGAGCTTGACTTTCACTCCATGGCTTCCTTCTTCAAAGCTCAACCCAACTGGGTTTGAGCGACACAATAAGAACATGTCTATTTTCCCCTCTAGGA GGAAACCCTTGAGCAAGAACAAGGGGGGTTTCTCTTCTGTCACTCCTGTGGCTAGGCTATTTGGACCATCAATATTTGAAGCTTCGAAGCTCAAGGTGTT GTTTTTAGGGGTTGATGAGAAGAAGCATCCTGGGAAATTGCCAAGGACTTACACCCTCACCCACAGTGATATTACCTCTAAGCTCACTCTCGCCATCTCT CAGACCATTAATAACTCTCAGCTGCAGGGATGGGCGAACAAATTGTACAGAGATGAGGTGGTGGCAGAGTGGAAGAAGGTGAAAGGGAAGATGTCTCTCC ATGTTCACTGTCATATCAGTGGAGGTCATTTCCTGCTCGATCTTATTGCTAAGCTCAGATACATCATCTTCTGCAAAGAACTTCCTGTGGTGCTGAAGGC GTTTGTCTATGGAGATGGGAATCTGTTGAACAACTACCCGGAATTACAGGAGGCATTGGTTTGGGTTTACTTCCATTCAACAATCCCAGAATTCAACAAG GTGGAGTGCTGGGGTCCACTAATGGACGCATCAGCGCCACTACCGCCACCTCCTAAAAGGAAGGAGTTTGGCAACGGTGGCCCTGAGGTGGGCCAGGGGG AGGAAGAAGAATCGGGGAAGGCAAGCTCATCAACCAACTGGGAACTGCCAAGAGCATGCCAAGAAGACTGTAGCTGTTGTTTTCCACCAATCAGTAACAT CCCATGGTCTCAAAACTTTCCTTTTGCTTCTGAAACTCCTCAACCTGGTGCTGGGACAACGACCCAAGATGGCTTAAATCAGCCCTTCCAGCAGCAACCT TGA
AA sequence Show only first row Show all	>Lus10024484 pacid=23170197 polypeptide=Lus10024484 locus=Lus10024484.g ID=Lus10024484.BGIv1.0 annot-version=v1.0 MGSLTFTPWLPSSKLNPTGFERHNKNMSIFPSRRKPLSKNKGGFSSVTPVARLFGPSIFEASKLKVLFLGVDEKKHPGKLPRTYTLTHSDITSKLTLAIS QTINNSQLQGWANKLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLIAKLRYIIFCKELPVVLKAFVYGDGNLLNNYPELQEALVWVYFHSTIPEFNK VECWGPLMDASAPLPPPPKRKEFGNGGPEVGQGEEEESGKASSSTNWELPRACQEDCSCCFPPISNIPWSQNFPFASETPQPGAGTTTQDGLNQPFQQQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	0	1
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	1.0	0.9556
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	3.0	0.9322
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	6.3	0.9368
AT5G20885			RING/U-box superfamily protein...		Lus10043353 [exp]	6.6	0.8956
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	7.9	0.9301
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	12.4	0.9098
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	12.5	0.9224
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	13.4	0.9129
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	13.4	0.9013
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	14.4	0.9161

Compare expression of checked genes

Lus10024484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.