Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62990 396 / 4e-140 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G25220 329 / 5e-112 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 317 / 8e-108 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 297 / 5e-100 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G70510 104 / 4e-26 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 94 / 3e-22 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G62360 81 / 4e-17 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT4G08150 78 / 2e-16 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT2G27990 61 / 3e-10 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT5G02030 59 / 1e-09 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017824 [exp] 326 / 4e-114 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001941 [exp] 312 / 1e-105 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 306 / 4e-103 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10006291 [exp] 298 / 2e-99 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 278 / 7e-95 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001195 [exp] 194 / 2e-62 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10013037 [exp] 96 / 1e-22 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 94 / 7e-22 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 92 / 3e-21 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112200 [exp] 434 / 3e-155 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.006G259400 [exp] 327 / 9e-111 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 315 / 2e-106 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 304 / 2e-103 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 291 / 4e-98 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.005G014200 [exp] 116 / 2e-30 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 110 / 4e-28 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.011G011101 [exp] 96 / 1e-22 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 96 / 1e-22 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.015G079100 [exp] 95 / 2e-22 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10024485 pacid=23170189 polypeptide=Lus10024485 locus=Lus10024485.g ID=Lus10024485.BGIv1.0 annot-version=v1.0 ATGCAAGAGCCGAGCTTGGGCATGATGGGAGGAGGAGAAATGGAGCAGAGCAGCCGGGAGGTGAAGGCGGAGATAGCGACACACCCACTTTACGAGCAGT TGTTGGGTGCACACTGGCTCTCTCAATCTCATCACCTCCTCCGCTCTTACGCCGGCTCCGGCTGCAACCTAACCCCTCACGAACGCCAAGACCTTGATAA CTTCTTGGCGCAGTACTTGATAGTGCTGTGTGGCTTCAAAGAGCAGCTTCAACAACACGTCAGAGTTCACGCCGTTGAGGCCGTTATGCCCTGCCGTGAA ATCGAAACCTCCTTCCAATCTCTCACAGGAATGAGTTTAGGAGAGGGAACAGGGGCAACAATGTCGGACGATGAAGATGATCAGTCAATGCACATGGATT TTAGTCTTGATCAACCAGGATTGATGACAAGTAGTAGCAGTGTTGGGGATGCACATGACATGATGATGGGGTTCGGCCCTCTTCTCCCGACAGAATCGGA ACGTTCTCTAATGGAGAGAGTTCGTCAGGAACTGAAGATAGAACTGAAGCAAGGTTTCAAATCCAGAATCGAAGATGTCAGAGAAGAGATACTCAGGAAG AGAAGAGCTGGCAAATTACCAGGAGACACCACCACCGTTCTTAAAAACTGGTGGCAGCAACACTCCAAATGGCCTTACCCTACTGAAGATGACAAAGCAA AGCTGGTGGAGGAGACAGGGCTGCAACTGAAGCAAATAAACAACTGGTTCATCAACCAAAGGAAGAGAAACTGGCACACTAACTCTCAATCTGTCACCTC CCTGAAGTCCAAGCGTAAAAGGTAG
AA sequence Show only first row Show all	>Lus10024485 pacid=23170189 polypeptide=Lus10024485 locus=Lus10024485.g ID=Lus10024485.BGIv1.0 annot-version=v1.0 MQEPSLGMMGGGEMEQSSREVKAEIATHPLYEQLLGAHWLSQSHHLLRSYAGSGCNLTPHERQDLDNFLAQYLIVLCGFKEQLQQHVRVHAVEAVMPCRE IETSFQSLTGMSLGEGTGATMSDDEDDQSMHMDFSLDQPGLMTSSSSVGDAHDMMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRK RRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHTNSQSVTSLKSKRKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	1.0	0.9246
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	1.4	0.9227
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	1.7	0.8934
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	4.9	0.8220
AT1G31940			unknown protein		Lus10010425 [exp]	5.7	0.8412
AT2G46550			unknown protein		Lus10023163 [exp]	10.0	0.8352
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	11.5	0.8169
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	11.7	0.8302
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	13.0	0.7809
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	13.0	0.8135

Compare expression of checked genes

Lus10024485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.