Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12570 669 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 618 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 614 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G72970 568 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 555 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 456 / 3e-155 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 392 / 6e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 387 / 6e-129 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017827 [exp] 1041 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 848 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10027406 [exp] 613 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 607 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 604 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 600 / 0 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 600 / 0 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10003176 [exp] 596 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 588 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111500 [exp] 825 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 611 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 610 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 472 / 7e-163 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 463 / 7e-158 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 401 / 6e-134 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 288 / 4e-90 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 286 / 2e-89 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 71 / 2e-14 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10024487 pacid=23170242 polypeptide=Lus10024487 locus=Lus10024487.g ID=Lus10024487.BGIv1.0 annot-version=v1.0 ATGGGTAGCTTTTACGGTCTTGTCGGCGTCCGTTTCTTCTTCTTTTTTTTCTTTGTTTTTCAAGGATGCAGCCCCTCTGCTTCTCAGCAAGCTGATGATC ACAATTGCACATTTGTCCACGACGCAACCACTGCGCCTGAGGTGTCCTACTATGACTACATAATCGTGGGAGGGGGCACAGCAGGGTGTCCGTTGGCCGC CACACTCTCTCAAAACGCCAGCGTTTTGGTGCTGGAACGCGGGGGTTCCCCTTATGGCAACCCAAACATCACAAACTTGGCCAACTTTGGAGCCCCACTG TCGGACAACTCCCCTTACTCACCTGCACAACGCTTCGTCTCGGAGGATGGAGTCTTCAATTCACGCGCCCGTGTACTTGGTGGCGGAACTTGCCTCAACG CCGGCTTCTACTCCCGCGCATCCGCCGATTACATCAGGGAGGTGGGGTGGAATGTTAAGCTGGCGGAGGAGTCGTATCAGTGGATTGAGAAGAAAGTGGC ATTCCGGCCACCCATGGGACCTTGGCAATCCGCCATTAGAGATGCTCTTGTCGACTCCGGTGTGGCCCCTAACAATGGTTTCACTTACGACCATATTTAT GGTACCAAATTTGGTGGCTCCATTTTCGACACGTCCGGCCATCGTCACACCTCTGCCGACCTACTCAACTACGCCAACCCCGATCGCCTCACCGTTCTTC TTAAGGCCACTACTCGCAAAATCCTCTTCCGAACTAAAGGAAGGGCAAGGCCCACAGCTCAGGGAGTGTCGTTTAGAGACGCAGCTGGGGTGAAGCACAG AGCGTATTTAAAGAGAGGAGCCCACAATGAAATTATCATATCAGCTGGGGCACTAGGAAGCCCACAGCTATTGATGCTGAGTGGAGTAGGCCCAGCCCAC CAACTCAGTTCTCACAACATTACTGTTATACTTGACCAGCCCATGGTTGGGCAGCTCATGTCCGATAATCCTATGAATGCCGTTTTCGTTCCTTCGCCGG TGCCGGTGGAGGTCTCCCTCATTGAGGTCGTCGGAATCACCGAATTCGGCGGCTATATTGAAGCCGCCAGCGGTGTCAACTTCGGGGGATACTCCAACAA TGACCACGGCTTGTTTTTCCCCAAAATTGGTCAATTATCAACCATGCCATTAAAGCGGAGGACATCAGATGCAACATACAACATGAGCAAGGTAGACATG TCAGCCTTCCAGGGAGGCTTCATCCTTGAAAAAATCATGGGACCTCTATCAACCGGGCACTTAGAGCTCACTTCTAGGAACCCTAACGAGAACCCATCGG TCACATTCAACTACTTCAAACACCCTCAAGATTTGGACCGATGTGTGCAAGGGATGTCGATGATAGGGAAAGTGATCGACTCAAAATCCTTTTCGAAATT CAAGTACGACTTCATGTCAGTCCCAGATCTACTCAACCTAACAGCGAGCGCCGCAATGAACTTGCTACCGAAGCACGACAATTCTTCAACATCATTGGAA CAGTTCTGTAAAGACACTGTGATGACTATATGGCATTACCATGGTGGGTGCCAAGTGGGAGCTGTAACGGATACTGATTACAAAGTGCTTGGAGTTGATG CGTTGAGGGTTATTGATGGTTCCACTTTTAATGCATCCCCTGGCACTAATCCTCAGGCCACAGTTATGATGCTTGGAAGGTATATGGGAGTTAAGATGTT GAGTGAGAGGGTTGCAAGTACTGAAGGCTAA
AA sequence Show only first row Show all	>Lus10024487 pacid=23170242 polypeptide=Lus10024487 locus=Lus10024487.g ID=Lus10024487.BGIv1.0 annot-version=v1.0 MGSFYGLVGVRFFFFFFFVFQGCSPSASQQADDHNCTFVHDATTAPEVSYYDYIIVGGGTAGCPLAATLSQNASVLVLERGGSPYGNPNITNLANFGAPL SDNSPYSPAQRFVSEDGVFNSRARVLGGGTCLNAGFYSRASADYIREVGWNVKLAEESYQWIEKKVAFRPPMGPWQSAIRDALVDSGVAPNNGFTYDHIY GTKFGGSIFDTSGHRHTSADLLNYANPDRLTVLLKATTRKILFRTKGRARPTAQGVSFRDAAGVKHRAYLKRGAHNEIIISAGALGSPQLLMLSGVGPAH QLSSHNITVILDQPMVGQLMSDNPMNAVFVPSPVPVEVSLIEVVGITEFGGYIEAASGVNFGGYSNNDHGLFFPKIGQLSTMPLKRRTSDATYNMSKVDM SAFQGGFILEKIMGPLSTGHLELTSRNPNENPSVTFNYFKHPQDLDRCVQGMSMIGKVIDSKSFSKFKYDFMSVPDLLNLTASAAMNLLPKHDNSSTSLE QFCKDTVMTIWHYHGGCQVGAVTDTDYKVLGVDALRVIDGSTFNASPGTNPQATVMMLGRYMGVKMLSERVASTEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	0	1
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	2.4	0.9194
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	2.4	0.9301
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	3.9	0.9065
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	8.1	0.8935
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	8.1	0.9152
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	11.0	0.8875
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	11.5	0.9149
AT1G51080			unknown protein		Lus10034834 [exp]	13.4	0.8737
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	16.5	0.9003
AT4G19420			Pectinacetylesterase family pr...		Lus10033304 [exp]	19.0	0.8839

Compare expression of checked genes

Lus10024487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.