Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11780 56 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006336 [exp] 139 / 2e-35 AT4G23020 141 / 5e-37 unknown protein Lus10029604 [exp] 130 / 2e-32 AT4G23020 114 / 4e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110900 [exp] 92 / 1e-19 AT4G23020 135 / 9e-35 unknown protein Potri.003G121100 [exp] 74 / 9e-14 AT4G23020 94 / 2e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024488 pacid=23170222 polypeptide=Lus10024488 locus=Lus10024488.g ID=Lus10024488.BGIv1.0 annot-version=v1.0 ATGCTCCAAGATTACTTGACCGGCGACATCATCAGCTCTTGTTCATCCAACGGCTTCAAATCCTTCCCTCGCCACCAATGCTGCCCCACCGCCACCGTAA GCTCCCTCCTCAAATCCAGACCCAAACCCAAACCTCAGCTAGTCACTCACAAGTCCCTCCGCCACTCCTCCGCCTTCCACAAGGTGTCGGTGGCCGTTGT CAAGGCCGTCAGATCATTCCCCTTCAACCCCTCCTCCTCTGGAAAGAAACCGCTTCATCTCACAAGGAGCCTCTCCCGGAGGTTGCTGAGGAAGAGCTTC TTCTGGCGGAGGAAAGACGTAAATGTCGCTCACGAATCTGACGGACGGTGGCGATCGTTCTATGAGTTCCTCCAAGAACAGGATCAAAAGCCACTACCAC GAGAAAATCCTCTCACGGCTAGTTTGGGCAATGATGCAATGGCGACGAGGGTTTCGACGAGCTCGAGCAGCAGTACTAGTAAAAGCAACGGCAGGAAGAG TTGTTCTTGCGAGGGAGAATTCACGGCAGACAATGGGGGCAGTTCAGAGAGTTACGGCGGGGTAAATGATGGCGGTAAAAATGATATACCATCAGGTAAC ACAGTCAGCGAGAGGGAAGGCGTAACAACCGGCATGGAGTCCAGCACCATACCCTACGCACCGGAACTCGCCAAGAGTAAATTGTTTGAAACGCAAGCCA GGAACTCCAGCAGCAGAGTCGAGAGAGTGCTAGCTGCGCCTACCTCTGACGCACAGTTGGACTGGGTGGCGAAATCTACCGCGACGGTTACTCGTGAGAG CAAAGGTGTTTCATGCCTGACATGGAGACCAAATGAGGAAACAGAGCAGTTCAGTCCTGGTTCTATCCTCGACTGTCCCTTCAAGGATGATGATGTTAAA GAAGAAGAAGATAATGATGATGATGATGACAAAAGGGTCAACTCCCTCTTTGATCACCACACCCTTATTCACGTCGACGGGACCAAAAGGAAGCTGATGA GAAAGCTTACAAGGTTCGAATGTCAGCTGGCTGAACTCAAGCCCCTCAATTTACATAAGCGAATGACCACTGTGATCGAACATGACTCGATGTCATCAGA CATTACCAACTCCCCGTCATCATCATCCACGAGGCCACACTCTGAGACTTGTAGCAGCAGCATAAGCTCTTCCAGTGAACGAGAATGCTCAGAAATAACA AGAGACCCCCACGAGCTACTTAGCATTGTGAAAGAAAGAGCATCATCGTCACCAAGCATTAATATCGGGTTGATATCGAAATCTGAGCTTCTGCTGCTCG ACTTCTTCGAAGAGAAGTTCGAAAGCAAAGATGAGAACCCGCTTGAAGAGATGGAAACGGTGGCGGAAGAATGGTTAAGAGGGGAGGCAAAGGAAATGTT TGGTGGTTGGGAAGTGAAGGAGTGTAGAAATGTGTATCTGAAACATATGGATGGTGAGAATGGAGATTGGAGGAATGTTGTTGGTGAAATGAAGGAAGAG GTTGGGTTAGAGCTGGAGGATTACATCTTTACTTCTTTGATTGATGAAGTACTGTTACAACTTTACTAA
AA sequence Show only first row Show all	>Lus10024488 pacid=23170222 polypeptide=Lus10024488 locus=Lus10024488.g ID=Lus10024488.BGIv1.0 annot-version=v1.0 MLQDYLTGDIISSCSSNGFKSFPRHQCCPTATVSSLLKSRPKPKPQLVTHKSLRHSSAFHKVSVAVVKAVRSFPFNPSSSGKKPLHLTRSLSRRLLRKSF FWRRKDVNVAHESDGRWRSFYEFLQEQDQKPLPRENPLTASLGNDAMATRVSTSSSSSTSKSNGRKSCSCEGEFTADNGGSSESYGGVNDGGKNDIPSGN TVSEREGVTTGMESSTIPYAPELAKSKLFETQARNSSSRVERVLAAPTSDAQLDWVAKSTATVTRESKGVSCLTWRPNEETEQFSPGSILDCPFKDDDVK EEEDNDDDDDKRVNSLFDHHTLIHVDGTKRKLMRKLTRFECQLAELKPLNLHKRMTTVIEHDSMSSDITNSPSSSSTRPHSETCSSSISSSSERECSEIT RDPHELLSIVKERASSSPSINIGLISKSELLLLDFFEEKFESKDENPLEEMETVAEEWLRGEAKEMFGGWEVKECRNVYLKHMDGENGDWRNVVGEMKEE VGLELEDYIFTSLIDEVLLQLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11780			unknown protein		Lus10024488 [exp]	0	1
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	1.4	0.9229
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	3.7	0.9024
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10002527 [exp]	4.6	0.8528
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	8.0	0.8223
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	9.5	0.8559
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	13.1	0.8438
AT5G08540			unknown protein		Lus10017363 [exp]	15.4	0.8582
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	17.2	0.8569
AT5G47700			60S acidic ribosomal protein f...		Lus10033403 [exp]	17.9	0.8171
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	18.3	0.8605

Compare expression of checked genes

Lus10024488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.