Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024490 pacid=23170187 polypeptide=Lus10024490 locus=Lus10024490.g ID=Lus10024490.BGIv1.0 annot-version=v1.0 ATGGCATTGCACGATCATGAGTGGATGGAAAGGATTGATAGTTTCCCTGATAAAAGTTCCACTGGAGCGAAGCAGGTTTATTTGGTCAACTGTCATAAAG GCCGAGTTGACCAGGGGAAGAAGAATGCATCTGAGGCGCCGTGTGCTAGCGGGGTATCTTGTCAACAGAAGCAAAGTGTGTTAACAGGTGGGTCCATTGC TAAGGCCACTGAAGTTGGGCATGTCACCTCTTCCCAGGCCTATATTGTTCCTCCTCCTAGTCATCTCCAAGTTGCGTTGAATCCTTTGTTCTCGGCTGGG CATCTTGCTACGTCCAAGGCTTGGGCTTAA
AA sequence Show only first row Show all	>Lus10024490 pacid=23170187 polypeptide=Lus10024490 locus=Lus10024490.g ID=Lus10024490.BGIv1.0 annot-version=v1.0 MALHDHEWMERIDSFPDKSSTGAKQVYLVNCHKGRVDQGKKNASEAPCASGVSCQQKQSVLTGGSIAKATEVGHVTSSQAYIVPPPSHLQVALNPLFSAG HLATSKAWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024490 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	1.0	0.9596
					Lus10029087 [exp]	2.0	0.9476
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	2.4	0.8797
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016495 [exp]	2.8	0.9157
AT4G32900			Peptidyl-tRNA hydrolase II (PT...		Lus10011608 [exp]	3.5	0.9340
AT2G48060			unknown protein		Lus10029968 [exp]	4.7	0.8331
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	5.6	0.7848
					Lus10007244 [exp]	7.7	0.8272
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	9.2	0.8834
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	11.0	0.8570

Compare expression of checked genes

Lus10024490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.