Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12650 192 / 8e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017837 [exp] 369 / 2e-130 AT1G12650 224 / 2e-73 unknown protein Lus10020336 [exp] 324 / 1e-112 AT1G12650 216 / 2e-70 unknown protein Lus10005657 [exp] 273 / 9e-93 AT1G12650 179 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110000 [exp] 263 / 8e-89 AT1G12650 215 / 5e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06102 [flax] [poplar] RRP36 rRNA biogenesis protein RRP36
Representative CDS sequence Show only first row Show all	>Lus10024493 pacid=23170209 polypeptide=Lus10024493 locus=Lus10024493.g ID=Lus10024493.BGIv1.0 annot-version=v1.0 ATGGCGAAACCAAGTAAAGATGTTGCGGCTCCGAGAAAAAATCAGTTTCCGGAAAGCGAAGAAGACGACGAGGAGCTCTTGTCTTCTTCGTCAGAAGAGG ATGATGAGGAAGATGAGTTAGAGAGAGAACTTGCCGATGTTACGTTTGAGGAGCTGCAGAAAGCAATGTCCAACGGTTCTGATTCGGTTTACAGAAAGCC CAACTTAGAGAAGAAGTCTAAGAGAGCCAACAAGAACATGCCAGTGGAGGTCACTTGCAAAAAGCCAGTTAGTCGGTTTCGAGAGGTTATTCAAGCTCCC AAGAAGGTGGTACGCGATCCTCGCTTCGAGTCCTTGTGTGGTACACTAAATGTGGAGGGGTATAGGAAGAGATACAATTTTCTGTACGAGAATGATCTTC CTGCTGAAAAAGAGGAGTTAAAGAAACAGCTTAAGAAACCAAAAGACCCTGTTGCCATAGATCGATTGAAGGAACAAATGGCTTGGATTGACAAGCAGCT AAAGTTTGACACGTCAAAACAAGTGGAGTCGTCAATTCTGACTGAACACAAGAAGAAAGAGAGGGAAGCAGCAAAGCGTGGCAAACAGCCATATTATCTC AAGAGATCTGATATAAAGAAACAGAGGCTGGTGGACAAGTATAAGGAACTCAAGGCCACTGGAAAGCTTGACACTTTCATTGAGAAGAAAAGAAAGAAGA ATGCTGCCAAGGATCACAGGTTTATGCCATACCGAAGACCAGCTACAGATGAGTAG
AA sequence Show only first row Show all	>Lus10024493 pacid=23170209 polypeptide=Lus10024493 locus=Lus10024493.g ID=Lus10024493.BGIv1.0 annot-version=v1.0 MAKPSKDVAAPRKNQFPESEEDDEELLSSSSEEDDEEDELERELADVTFEELQKAMSNGSDSVYRKPNLEKKSKRANKNMPVEVTCKKPVSRFREVIQAP KKVVRDPRFESLCGTLNVEGYRKRYNFLYENDLPAEKEELKKQLKKPKDPVAIDRLKEQMAWIDKQLKFDTSKQVESSILTEHKKKEREAAKRGKQPYYL KRSDIKKQRLVDKYKELKATGKLDTFIEKKRKKNAAKDHRFMPYRRPATDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12650			unknown protein		Lus10024493 [exp]	0	1
AT1G12650			unknown protein		Lus10017837 [exp]	1.0	0.8899
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Lus10021609 [exp]	2.6	0.8167
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	2.8	0.8364
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	5.2	0.8376
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	7.7	0.7977
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	7.9	0.7693
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	10.0	0.7784
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	10.0	0.8465
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	10.5	0.8251
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	12.5	0.8243

Compare expression of checked genes

Lus10024493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.