Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12710 361 / 9e-126 ATPP2-A12 phloem protein 2-A12 (.1) AT3G61060 337 / 3e-116 ATPP2-A13 phloem protein 2-A13 (.1.2) AT1G63090 336 / 5e-116 ATPP2-A11 phloem protein 2-A11 (.1) AT5G52120 276 / 1e-92 ATPP2-A14 phloem protein 2-A14 (.1) AT3G53000 254 / 1e-83 ATPP2-A15 phloem protein 2-A15 (.1) AT1G09155 86 / 3e-19 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02360 81 / 2e-17 ATPP2-B10 phloem protein 2-B10 (.1) AT1G80110 79 / 8e-17 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02230 78 / 3e-16 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02240 72 / 5e-14 MEE66 maternal effect embryo arrest 66, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029593 [exp] 464 / 3e-166 AT1G12710 398 / 2e-140 phloem protein 2-A12 (.1) Lus10027423 [exp] 294 / 3e-99 AT3G61060 320 / 1e-109 phloem protein 2-A13 (.1.2) Lus10008642 [exp] 286 / 3e-96 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1) Lus10005769 [exp] 281 / 6e-94 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10020674 [exp] 89 / 3e-20 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 81 / 2e-17 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10018171 [exp] 81 / 5e-17 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 80 / 9e-17 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10007926 [exp] 74 / 6e-15 AT2G02360 192 / 4e-60 phloem protein 2-B10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121900 [exp] 427 / 1e-151 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.001G109800 [exp] 427 / 1e-151 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.014G075800 [exp] 358 / 7e-125 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.015G138600 [exp] 345 / 1e-119 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.012G136200 [exp] 343 / 1e-118 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.006G117600 [exp] 281 / 2e-94 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.001G050100 [exp] 84 / 8e-19 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.005G022000 [exp] 84 / 3e-18 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016100 [exp] 79 / 7e-17 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 79 / 2e-16 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024494 pacid=23170227 polypeptide=Lus10024494 locus=Lus10024494.g ID=Lus10024494.BGIv1.0 annot-version=v1.0 ATGGGTGCTAATTTCTCTTCCATTTTCATGGATCCACCGACTACTTGTCCTGTATTGGGTGCTTTCCCTCTTTTAGTTCAACAGTCGCCGCCACCGCTGC CGCCGCTCCTGAGACCCACGCTGGGGGACTTGCCTGAGAGCTGCGTGGCTATGGTTCTGTCTAACTTGGACCCACTCGAGATTTTCCAATTGGCCAAGCT AAACAGTGCGTTTCGCGGGGCGTCCTGGGCTGATTTCGTCTGGGAATCCAAATTGCCCGCCAATTATCGTACCCTTATGGAGAAGGTTTTGGGGGTTGAT CAGGATGATTTGAGTAAAATGGGCAAGAGAGAGATTTACACCAGGCTCTGCGCCGCTAATTCTTACGATGCTGGCACTAAGGTTGCGTGGCTTGATACGA ATACTGGTGGTGTCTGTGTATCTCTTGCTTCCAAGGGCTTAACCATAACTGGCATCGATGATCGCAGATACTGGAATCATGTTCCAAGCACGGAATCCAG ATTCTCTTCTGTTGCATACCTTCAGCAGATATGGTGGTTTGAGGTCAGCGGGGAGTTTGAGTTCCCATTCCCAGCAGGGACATACAGCCTATTCTTCAGG CTACAGCTGGGGCGAACTGCCAGGAGATTCGGCCGGAGGATCTGCAATACCGAGCACGTCCATGGCTGGGATAGAAAACCGGTCCGGTTTGAACTGTGGA CTTCTGATGGCCATTATGCATCTTCCCAGTGTGTTTTGAATGATACCGGAAAGTGGAATCTGTACCATGCTGGTGACTTCCTTGTTGAGAAAGGTAACGA ATTGACAAAGCTGCGTTTCTCCATGACGCAGATTGATTGTACGCACACTAAGGGGGGTCTGTGTCTGGACACAGTATTAGTATTCCCTTGTAAATTAGGA GAAAGGTTGAACCATTTTTTAGCTCAGCAACCTTGA
AA sequence Show only first row Show all	>Lus10024494 pacid=23170227 polypeptide=Lus10024494 locus=Lus10024494.g ID=Lus10024494.BGIv1.0 annot-version=v1.0 MGANFSSIFMDPPTTCPVLGAFPLLVQQSPPPLPPLLRPTLGDLPESCVAMVLSNLDPLEIFQLAKLNSAFRGASWADFVWESKLPANYRTLMEKVLGVD QDDLSKMGKREIYTRLCAANSYDAGTKVAWLDTNTGGVCVSLASKGLTITGIDDRRYWNHVPSTESRFSSVAYLQQIWWFEVSGEFEFPFPAGTYSLFFR LQLGRTARRFGRRICNTEHVHGWDRKPVRFELWTSDGHYASSQCVLNDTGKWNLYHAGDFLVEKGNELTKLRFSMTQIDCTHTKGGLCLDTVLVFPCKLG ERLNHFLAQQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	2.6	0.8061
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	5.7	0.7758
AT3G07790			DGCR14-related (.1)		Lus10012321 [exp]	7.9	0.7898
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10013243 [exp]	8.8	0.7466
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018165 [exp]	17.2	0.7812
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	21.0	0.7266
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	22.3	0.7567
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	23.7	0.7186
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	26.1	0.7375
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	29.6	0.7671

Compare expression of checked genes

Lus10024494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.