Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 718 / 0 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G48000 366 / 1e-122 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G78490 355 / 4e-118 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT1G55940 355 / 3e-116 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G44970 328 / 7e-108 Cytochrome P450 superfamily protein (.1) AT4G15396 310 / 8e-101 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT1G65670 301 / 3e-97 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G15300 298 / 6e-96 CYP702A2 "cytochrome P450, family 702, subfamily A, polypeptide 2", cytochrome P450, family 702, subfamily A, polypeptide 2 (.1) AT4G15393 295 / 4e-95 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT4G15310 295 / 9e-95 CYP702A3 "cytochrome P450, family 702, subfamily A, polypeptide 3", cytochrome P450, family 702, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017839 [exp] 782 / 0 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 434 / 2e-148 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028628 [exp] 378 / 1e-127 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042788 [exp] 378 / 4e-127 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10027434 [exp] 363 / 2e-121 AT1G12740 342 / 3e-113 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10040193 [exp] 280 / 5e-89 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014240 [exp] 273 / 9e-87 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10034377 [exp] 272 / 2e-86 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10005075 [exp] 267 / 1e-84 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122500 [exp] 807 / 0 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 805 / 0 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 471 / 9e-164 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 466 / 8e-162 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 451 / 7e-156 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064900 [exp] 448 / 1e-154 AT1G12740 477 / 5e-166 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 447 / 2e-154 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 446 / 4e-154 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 446 / 5e-154 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G204100 [exp] 446 / 9e-154 AT1G12740 468 / 9e-163 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024495 pacid=23170218 polypeptide=Lus10024495 locus=Lus10024495.g ID=Lus10024495.BGIv1.0 annot-version=v1.0 ATGTGGGTGTTCTGCTTTGGAACTTTGCTTGTTATAGGCCTCATACGTTGGGTATACCTTTGGAGAAATCCCAGATGCAATGGCAAACTCCCACCAGGTT CAATGGGCTTACCACTCCTTGGTGAGACCTTTGACTTCTTTGCTCCCAACACAACTTTTGAGATTCCTCCTTTTATTAAAGAGAGGATGAAAAGATATGG ATCGATATTCCGGACTAGTTTGGTTGGAAGGTCAATTGTCGTATCGACAGACCCTGATCTCAACTACTTCATATTCCAACAAGAGGGTCATCTGTTCCAA AGCTGGTACCCAGACACATTCACAGAGATCTTTGGACGACAAAATGTGGGCTCATTACATGGGTTTATGTACAAGTACTTGAAGAACTTGGTGCTCAATC TCTTCGGTCCTGAAAGCCTCAAGAAAATGATCCCTGAAATTGAACAGACAACATCAAAGAGATTAAAACAATGGTCTCATCAAGACACTGTAGAAATGAA AGAAGCAACTGCAACTACTATATTCGATCTTACTGCAAAGAAGTTGATTAGCTATGATCAAGACAATTCATCAGAGAATCTAAGAGAGAACTTTGTTGCA TTCATACAAGGCTTAATCTCCTTCCCGCTGGATATTCCTGGAACAGCATATCATAAATGTCTAAAGGGCAGGAAAAGAGCAATGAAGATGCTGAAGAACT TGCTACATGAAAGACGAATAAACCCAAGAAAGCATCAAGGGGATTTCTTTGATCAAGTACTTGAAGAACTTCATAGGGACAACACAATCCTCACAGAGGA AATTGCTCTAGACTTGATGTTTGTTCTACTATTTGCAAGCTTTGAAACAACATCTCTAGCTTTAACCTTGGCCATGAAATTCCTCTCAGACCATCCACGG GTGTTGAAGCAGTTAACGGAAGAGCATGAAGAAATTCTAAGAAAGCGACAGAATGCCGACTCTGGCCTTACATGGAAAGAGTATAAATCAATGACATTTA CATTTCAGTTCATCAATGAAACAGTGAGATTGGCAAACATAGTTCCGGGAATCTTCAGAAAAGTGCTAAGAGACATTCAGTTCAAAGGATATACCATTCC AGCCGGTTGGGCAGTTATGGTCTGTCCACCAGCCGTTCATTTAAACCCAGAAAAATATGAAGATCCTCTTGCCTTCAATCCATGGAGATGGGATGGGCAA GAACTAAACGGTGCATCAAGAAATTTCATGGCATTTGGTGGAGGCATGAGATTTTGTGTTGGTACTGAATTTACAAAGGTTCAGATGGCAGTTTTTCTAC ATTGCTTGGTCACAAAGTACAGGTGGAAACCGATTAAAGGAGGAAACATCATCCGCACCCCTGGTTTACAGTTTCCAGAAGGATATCACGTTCAAATCCT TGAAAGAGACACGTCAACATAA
AA sequence Show only first row Show all	>Lus10024495 pacid=23170218 polypeptide=Lus10024495 locus=Lus10024495.g ID=Lus10024495.BGIv1.0 annot-version=v1.0 MWVFCFGTLLVIGLIRWVYLWRNPRCNGKLPPGSMGLPLLGETFDFFAPNTTFEIPPFIKERMKRYGSIFRTSLVGRSIVVSTDPDLNYFIFQQEGHLFQ SWYPDTFTEIFGRQNVGSLHGFMYKYLKNLVLNLFGPESLKKMIPEIEQTTSKRLKQWSHQDTVEMKEATATTIFDLTAKKLISYDQDNSSENLRENFVA FIQGLISFPLDIPGTAYHKCLKGRKRAMKMLKNLLHERRINPRKHQGDFFDQVLEELHRDNTILTEEIALDLMFVLLFASFETTSLALTLAMKFLSDHPR VLKQLTEEHEEILRKRQNADSGLTWKEYKSMTFTFQFINETVRLANIVPGIFRKVLRDIQFKGYTIPAGWAVMVCPPAVHLNPEKYEDPLAFNPWRWDGQ ELNGASRNFMAFGGGMRFCVGTEFTKVQMAVFLHCLVTKYRWKPIKGGNIIRTPGLQFPEGYHVQILERDTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	0	1
AT3G05390			unknown protein		Lus10029907 [exp]	4.0	0.9698
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	4.5	0.9728
AT1G06930			unknown protein		Lus10024185 [exp]	5.5	0.9665
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	6.9	0.9635
AT3G25600			Calcium-binding EF-hand family...		Lus10017900 [exp]	8.5	0.9268
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	9.6	0.9641
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	12.4	0.9634
AT3G24750			unknown protein		Lus10038162 [exp]	13.7	0.9586
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	13.8	0.9636
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	14.0	0.9568

Compare expression of checked genes

Lus10024495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.