Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63120 351 / 3e-121 ATRBL2 RHOMBOID-like 2 (.1) AT5G07250 320 / 2e-108 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 302 / 4e-102 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT2G29050 303 / 2e-101 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 263 / 7e-86 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT4G23070 239 / 3e-77 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G52580 195 / 3e-60 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 185 / 7e-56 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017840 [exp] 500 / 5e-180 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10023789 [exp] 307 / 9e-103 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10027436 [exp] 305 / 6e-102 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10003971 [exp] 312 / 5e-101 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10005464 [exp] 293 / 1e-97 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 288 / 1e-95 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10028036 [exp] 170 / 2e-49 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10003743 [exp] 169 / 5e-49 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122900 [exp] 434 / 8e-154 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 417 / 3e-147 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 365 / 1e-126 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 340 / 1e-116 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.009G031900 [exp] 317 / 3e-107 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 317 / 5e-107 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 315 / 7e-106 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 164 / 6e-47 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10024497 pacid=23170231 polypeptide=Lus10024497 locus=Lus10024497.g ID=Lus10024497.BGIv1.0 annot-version=v1.0 ATGGCGACTGTGGATCTAGAGCGAGGCTCGAAGAACGGAGGAGGGAACACAAACAACAGAAGCTTGAATCCCTACTATGTCGACACTTCTGAGAAGAAAT GGACTTCTTGGCTGGTTCCCATGTTTGTGCTCTCGAATGTTGCTGTGTTCATTATAGCCATGTATGTCAACAATTGTCCTCGCGACAATATTGGGTTTCA AGGCAAGTGTGTCGCCAGGTTCCTTGGGAGGTTATCTTTCCAGCCTCTGAGGGAAAACCCTCTCTTTGGTCCATCTTCTACCACACTGGAAAAAATGGGG GCTTTGGAATGGGACAAAGTAGTGCATAAACATCAAGGGTGGAGACTCGTTACTTGCATGTGGCTGCATGCTGGAGTTATTCATCTTCTTGCAAACATGC TGAGCTTGGTCTTCATTGGAATTCGGCTTGAGCAACAATTTGGATTTGTGAGAGTTGGGTTGATTTACCTGATTTCTGGACTTGGGGGTAGCATACTGTC CGCCCTTTTCATCCAAAAGAACATCTCCGTTGGTGCTTCTGGTGCTCTCTTTGGACTTTTGGGAGCCATGTTATCAGAGCTTCTTACCAACTGGACTATA TACAGTAACAAGATTGCTGCTCTGGTCACACTCCTAGTAATCATCGCCATCAACTTGGCTATAGGAATTCTACCACACGTAGACAACTTTGCTCACATTG GTGGCTTCTTGGCCGGTTTCCTTTTGGGGTTCGTATTTCTTGTTCGACCACAGTTTGGGTGGGTAGAGAGCCGACATCTGCCACCAGGTGCACGCGTTAA ATCCAAGCACAAGGCTTACCAGTACGTCCTATGGGTGGTTGCTGCAGTACTTCTCGTCGCTGGATTTGTAGTGGGGCTGATAATGCTGTTCAAAGGAGAG AACGGAAACGACCATTGCAGCTGGTGTCATTACCTAAGCTGTGTCCCTACTTCCAAATGGAACTGTCAGCGCTGA
AA sequence Show only first row Show all	>Lus10024497 pacid=23170231 polypeptide=Lus10024497 locus=Lus10024497.g ID=Lus10024497.BGIv1.0 annot-version=v1.0 MATVDLERGSKNGGGNTNNRSLNPYYVDTSEKKWTSWLVPMFVLSNVAVFIIAMYVNNCPRDNIGFQGKCVARFLGRLSFQPLRENPLFGPSSTTLEKMG ALEWDKVVHKHQGWRLVTCMWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGLIYLISGLGGSILSALFIQKNISVGASGALFGLLGAMLSELLTNWTI YSNKIAALVTLLVIIAINLAIGILPHVDNFAHIGGFLAGFLLGFVFLVRPQFGWVESRHLPPGARVKSKHKAYQYVLWVVAAVLLVAGFVVGLIMLFKGE NGNDHCSWCHYLSCVPTSKWNCQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10024497 [exp]	0	1
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10017840 [exp]	1.0	0.9817
AT1G76250			unknown protein		Lus10012274 [exp]	3.2	0.9722
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042526 [exp]	6.5	0.9541
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	8.1	0.9693
AT3G27210			unknown protein		Lus10011366 [exp]	8.2	0.9690
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	8.5	0.9633
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	10.5	0.9690
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	10.9	0.9666
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	12.5	0.9667
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	13.3	0.9665

Compare expression of checked genes

Lus10024497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.