Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23060 137 / 3e-36 IQD22 IQ-domain 22 (.1) AT5G62070 55 / 3e-08 IQD23 IQ-domain 23 (.1) AT5G07240 53 / 2e-07 IQD24 IQ-domain 24 (.1) AT4G14750 47 / 9e-06 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017841 [exp] 502 / 8e-178 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10006613 [exp] 65 / 2e-11 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10005760 [exp] 59 / 2e-09 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10027435 [exp] 57 / 1e-08 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10021904 [exp] 49 / 3e-06 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 49 / 4e-06 AT4G14750 288 / 2e-93 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108800 [exp] 255 / 3e-81 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.003G122800 [exp] 232 / 2e-72 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.012G139800 [exp] 122 / 5e-31 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 101 / 9e-24 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.008G156700 [exp] 69 / 9e-13 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 64 / 6e-11 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.013G038901 [exp] 47 / 1e-05 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.003G047800 [exp] 47 / 2e-05 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G190500 [exp] 46 / 2e-05 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.005G051500 [exp] 46 / 2e-05 AT4G14750 127 / 6e-33 IQ-domain 19 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024498 pacid=23170235 polypeptide=Lus10024498 locus=Lus10024498.g ID=Lus10024498.BGIv1.0 annot-version=v1.0 ATGGGGGATTTAATGGGAGCCTTGTACTTCGTCTCTTCTGTTCTCTTCCCAATAATTCCTTTGTGTTGGGCTAGGAGAGCTTTGAAAGCGTTAAAAGCAC TGGTTAGGCTACAGGCGTTAGTAAGAGGTCACATCCAAAGGAAGAGAAGGTTACAACAGATGCAGGCTGTGTTACTAGCTCAGGCACGAGCCCGAGTTGG ACGCATTCATGCTTCCGAGTCCTCCCAATCCAGCGGTGGAAAATCTTCTCATTCTCTCTACTACCACCACCATAATCCTGGTCTAGCAACCCCTGAAAAA ATTGAACATGGCATCAGGACTAAGAGTGGGAAATATGAGCCTTCATCATTGCTTAAGAGGACTGGGTCAAGATCCAATGACAACAAACCACATTCATCCC TAAGAAAGTCAGAAACTCGATCTGTGGAGCTGTCATGGGACCAGCACCAGCAGCAAGCTACAATGGAAGATGAAAAGAACAGTGACAAGATCCTTGAAAT CGATAATGGAGGAGGAAAGCACCACTATCTCGGTCATAAACAAAGGAGCATGTTTCACTCTGCCAATCTGGGCTTCTTTTCTGACCAGTATAGCCACAGT TTCACTACGTCCAAGGACACGGCTCCAAGTCCATCCTCGGAGGAAGTCCAGTCAATATACCCTCCGGAGGTCGACCAAGAAGTCTACTGCACGGCAGAGA ACAGTCCTCAACTGTTTTCTGCAACATCGTCAAGAGGCGGGAAGAGAAGTCCATTCACTCCTGCCAGGAGTGACGGATCGAGTAGCTTTTTGAGCGCTTT CGCTGACTATCCAAACTACATGTCGTACACCGAATCCGCAAGGGCGAAAGCAAGGTCCTTGAGTGCTCCGAAGCAGAGGCTTCACTACGAGCGTTCGATC TCTGCAAAAAGATTCTCTGTTAATAATGCATATGGTGAACCTAGATCGAGCAGCACTCAGAGGGCTTCTGCTGTTCGAGCTAGCTTCTCTAGCAAAGCTT ACCCAGGTTCGGGTCGACTAGATAGCCTGGGATTGCCCATGTGGCAGAAATGCTAG
AA sequence Show only first row Show all	>Lus10024498 pacid=23170235 polypeptide=Lus10024498 locus=Lus10024498.g ID=Lus10024498.BGIv1.0 annot-version=v1.0 MGDLMGALYFVSSVLFPIIPLCWARRALKALKALVRLQALVRGHIQRKRRLQQMQAVLLAQARARVGRIHASESSQSSGGKSSHSLYYHHHNPGLATPEK IEHGIRTKSGKYEPSSLLKRTGSRSNDNKPHSSLRKSETRSVELSWDQHQQQATMEDEKNSDKILEIDNGGGKHHYLGHKQRSMFHSANLGFFSDQYSHS FTTSKDTAPSPSSEEVQSIYPPEVDQEVYCTAENSPQLFSATSSRGGKRSPFTPARSDGSSSFLSAFADYPNYMSYTESARAKARSLSAPKQRLHYERSI SAKRFSVNNAYGEPRSSSTQRASAVRASFSSKAYPGSGRLDSLGLPMWQKC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	0	1
					Lus10004903 [exp]	1.7	0.7991
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	5.4	0.8096
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	7.4	0.7762
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	9.8	0.7590
AT1G55915			zinc ion binding (.1)		Lus10016607 [exp]	9.9	0.6809
					Lus10015131 [exp]	11.0	0.8035
					Lus10005392 [exp]	17.5	0.7445
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	23.3	0.6789
AT3G48100		ATRR2, IBC6, AR...	INDUCED BY CYTOKININ 6, ARABID...		Lus10042153 [exp]	27.9	0.5816
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	29.0	0.7076

Compare expression of checked genes

Lus10024498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.