Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23050 427 / 2e-139 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 359 / 2e-116 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 361 / 1e-113 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 357 / 5e-112 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 349 / 1e-109 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 339 / 3e-106 protein kinase family protein (.1) AT5G11850 340 / 1e-104 Protein kinase superfamily protein (.1) AT1G18160 338 / 5e-103 Protein kinase superfamily protein (.1) AT1G73660 334 / 4e-101 protein tyrosine kinase family protein (.1) AT1G08720 332 / 5e-101 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017844 [exp] 1152 / 0 AT4G23050 520 / 4e-175 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10016912 [exp] 377 / 3e-120 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 377 / 3e-119 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10040540 [exp] 360 / 3e-113 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10031341 [exp] 334 / 1e-102 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 333 / 3e-102 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 333 / 7e-102 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10027247 [exp] 334 / 1e-101 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10014368 [exp] 325 / 5e-99 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122700 [exp] 468 / 1e-155 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.008G105100 [exp] 378 / 4e-120 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 378 / 4e-120 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.015G040100 [exp] 336 / 1e-101 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 334 / 1e-101 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 333 / 3e-101 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 333 / 3e-101 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 325 / 1e-98 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 327 / 2e-98 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 321 / 5e-98 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10024502 pacid=23170255 polypeptide=Lus10024502 locus=Lus10024502.g ID=Lus10024502.BGIv1.0 annot-version=v1.0 ATGGCGGCAGACGACGACTCAGCTGGAAGTACTACCATGTACAGATCTCTGGCGGATCGGTGCCTGAGTCTGGAAATGAGTCAGACGAAGTTGAAACTGG AGCTCTCTCATCTACTGGAGGAAGACAAGAAGAAGAAGAGGACGACGAATACCATAGGAGAAGATAGCAGCAGCGGCGCAAAGAACGGCAATCAGATGTA TATGGAGCTGGCGTCATTCACCAGTGTGCCAGAGTCATTTCCTGCCTATAAGCACTTTCCGGGCTACTTCAGATATGGGAGTCCGCACCGGGGTGTGTTG GAGTCAATGGGACATGCTCTTCACGTATGCTCAGCTTCATCAGGACAGATCGTATATTGGAATCGTGCCGCTGAAATGCTGTACGGTTGGAATGTAAACG AGGTGATCGGGGAGAGAATTGCAACGCTTCTTGTGGCTGAAGAGTACCATGCTTCCTTTAGGAAAATATTAGGGAATCTGAGCTTTGGGCGTTTGTGGTC AGGTCAGTTCCCTTTTAGTAAGAAATCAGGGGAAGTGTTTATGGCCTTGGTCACCATGAGTTTAATGTACGAGGGTAATGAGCTTGCTGGTATCGTCACG GTTTCAAGTGATGCCACAGTGTTCAACAAGACAAAGTTAGGAAACCTGAACCGTGGTAATGATAGAGAAGGGCCAAACTCCAGCAAGATTCAGTGGCAGC ACCGCCCAGCCATTGCATCGTCAGTTTCTAATCTGGCTTCGAGATTCTTACCAAAAAAGCGTGATGATGAGGGTTCTGATGCCCATGTTGGTTCTAAGCC TGACGAATATTCTAAGGCGAGCATCCAGGATTCACTTGACACAAGTGGTTATACTACTTGTTACCAAAATGGCAAGAATTCCGCCAATCGAAAGAACCCT CCTAAAATCCTGCTACAGACAGCTAAAATGTTTGGGAATCTGAAATTGGGAGGATTCAATGTTAATGGTCACAAAGATGAAGAAAACGGTCAACCATATT CGCAAAGCGAAAATTTTATCAACAATTGGGCCTCAAAAAATACTAATCATCCTCGAGGACCAAAGGTGTCTGAGGTGGAAAGAAAGAGTAATGCTGTACG GGAAGGAAATTCATCTGATGCTCTTAACAATGACTTGCTTATTTCTGCGCGGAAAAATCCATATGCTTCTCAAGAAATCTGTGTGTCAAACTATATGGAG GAAATAAATCGATTTAATTTGCTGGAGGAGCCAGAGCCTGTCCAGGAAACCCAAGAAGATGAAGAAGATATAAGAACAGATGGCAAGCAAAGCAGTGGCA GTCGTGGAAGTTCATCAAGTAAGGGGAATAATGAGTTGAGTTCAAAGTTAGATTGTGGAATTCACTGGGAGGACCTTCGGTTAGCAGAGGAGATTGGGCA AGGCGCGTTTGCTGTTGTCTATCGTGCAATCTGGAATGGATCGGTGAGAATGCTTGCTATGGATGTTGCTGTCAAGGTTTATTTTGCTAATGACTACAAG GAAGAAACGTTACAAGATTACAAGAAAGAGATTGATATGATGAAGAGGCTTCGACACCCAAATGTGTTGCTTTTTATGGGAGCGGTGTATTCACCAGAAC GAATGGCCATGGTCACAGAGTTGTTGCCAAGGGGAAGCCTTTTCAAGACACTTCACAAAAACAATCAGGCTTTAGATATTAAAAAGCGGCTGAAGATGGC CCTTGACGTTACTAGAGGGATGAATTACTTGCACCGTAGAAATCCGCCTATTGTGCACAGAGATCTAAAATCTTCTAACCTGCTCGTTGACAAAAACTGG AATGTCAAGGTTGGGGACTTTGGTCTGTCAAAGTGGAAGCATGCAACCTTCTTGACTGCAAGATCAGGAACAGGAACGCCTCAATGGATGGCCCCCGAGG TCCTGCGAAATGATCCTTCGGACGAAAAGTCGGATGTATACAGTTTTGGAGTGATATTGTGGGAACTAATGACGGTCTCCGTTCCATGGAATAAACTCAA CTCCATGCAGGTTGTTGGAATTGTAGGCTTCATGGACAGAAGACTGGAATTGCCAGAAGATCTTGATCCCAATATAGCATCCATTATCTGCGACTGCTGG AAGAGTGATCCAAAGCAGCGGCCGTCGTTTGAAGACCTGATTCACCAAATGACAAGCATCATTCAGGGAGTTGGAACAGCTCCAGCTCAAAGGGCTGTGA AATAG
AA sequence Show only first row Show all	>Lus10024502 pacid=23170255 polypeptide=Lus10024502 locus=Lus10024502.g ID=Lus10024502.BGIv1.0 annot-version=v1.0 MAADDDSAGSTTMYRSLADRCLSLEMSQTKLKLELSHLLEEDKKKKRTTNTIGEDSSSGAKNGNQMYMELASFTSVPESFPAYKHFPGYFRYGSPHRGVL ESMGHALHVCSASSGQIVYWNRAAEMLYGWNVNEVIGERIATLLVAEEYHASFRKILGNLSFGRLWSGQFPFSKKSGEVFMALVTMSLMYEGNELAGIVT VSSDATVFNKTKLGNLNRGNDREGPNSSKIQWQHRPAIASSVSNLASRFLPKKRDDEGSDAHVGSKPDEYSKASIQDSLDTSGYTTCYQNGKNSANRKNP PKILLQTAKMFGNLKLGGFNVNGHKDEENGQPYSQSENFINNWASKNTNHPRGPKVSEVERKSNAVREGNSSDALNNDLLISARKNPYASQEICVSNYME EINRFNLLEEPEPVQETQEDEEDIRTDGKQSSGSRGSSSSKGNNELSSKLDCGIHWEDLRLAEEIGQGAFAVVYRAIWNGSVRMLAMDVAVKVYFANDYK EETLQDYKKEIDMMKRLRHPNVLLFMGAVYSPERMAMVTELLPRGSLFKTLHKNNQALDIKKRLKMALDVTRGMNYLHRRNPPIVHRDLKSSNLLVDKNW NVKVGDFGLSKWKHATFLTARSGTGTPQWMAPEVLRNDPSDEKSDVYSFGVILWELMTVSVPWNKLNSMQVVGIVGFMDRRLELPEDLDPNIASIICDCW KSDPKQRPSFEDLIHQMTSIIQGVGTAPAQRAVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23050			PAS domain-containing protein ...		Lus10024502 [exp]	0	1
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	12.1	0.8598
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	15.0	0.8279
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	15.6	0.8578
AT1G69550			disease resistance protein (TI...		Lus10038482 [exp]	34.3	0.8097
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	34.4	0.7570
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10035100 [exp]	36.6	0.7800
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	37.9	0.8187
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	38.3	0.8335
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	40.7	0.8263
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	41.3	0.8226

Compare expression of checked genes

Lus10024502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.