Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45760 58 / 3e-10 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT2G13350 56 / 2e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 52 / 6e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 50 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 49 / 6e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 40 / 0.0008 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008004 [exp] 367 / 2e-131 AT2G45760 56 / 1e-09 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10003570 [exp] 59 / 3e-10 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 58 / 7e-10 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 54 / 1e-08 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 47 / 4e-06 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 46 / 5e-06 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108300 [exp] 172 / 8e-55 AT2G45760 59 / 7e-11 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.010G065300 [exp] 64 / 4e-12 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 63 / 2e-11 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 62 / 2e-11 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 60 / 9e-11 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 55 / 6e-10 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G078700 [exp] 50 / 1e-07 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.019G065500 [exp] 48 / 1e-06 AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G078600 [exp] 47 / 1e-06 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.002G155300 [exp] 47 / 2e-06 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10024505 pacid=23170198 polypeptide=Lus10024505 locus=Lus10024505.g ID=Lus10024505.BGIv1.0 annot-version=v1.0 ATGGAAATTACCATAATATCAGCTCAGGGTCTGAAGAAAATGTCTAGTCTAAGCCTTTTCCCAGCCCACCGACGCCTCCGGCCGTTCGTTACCGTCTCTA CTTACCCGAAAACGAAGACGTCGTCGCTGGAGGATCATTCAGTGACGAAGAACAAAAACAGTTACATAACAAGGATTGATGATAAAGGAGGAGTGAATCC CACGTGGGGTGACAAATTCGTCATCCCTGTGGACGAATCTTTCTTCGGGTACAGTTACTCTTGCATTTACCTTCAACTCTACACTAAACAACTGCTTTCC GGCAGGGCTAACCTGGGTTGGTGCCAGATTCCGGTCGCCGATTTAGAGTCGGCGCAGCAGGGGTCATTGCGGTACCTGAGTTACAGGGTAAAGGATCATA GAGATGGGACTAGAGGGCAGGGGATTTTGAACGTTGCTGTTAGGACGTTGACGACGGGTAGAGTACCAGAAGAAGGAAGATTAGTTGCTGAGAGGTCTCA AACGGTGGCTGGCCGTCGAGAATCGGTTGGGTCCGGGGAGAAAGATTCCGGAACGGTGATTGGGATTCCTGTGGACATGATCTCGAAGATGAGAATCTGA
AA sequence Show only first row Show all	>Lus10024505 pacid=23170198 polypeptide=Lus10024505 locus=Lus10024505.g ID=Lus10024505.BGIv1.0 annot-version=v1.0 MEITIISAQGLKKMSSLSLFPAHRRLRPFVTVSTYPKTKTSSLEDHSVTKNKNSYITRIDDKGGVNPTWGDKFVIPVDESFFGYSYSCIYLQLYTKQLLS GRANLGWCQIPVADLESAQQGSLRYLSYRVKDHRDGTRGQGILNVAVRTLTTGRVPEEGRLVAERSQTVAGRRESVGSGEKDSGTVIGIPVDMISKMRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10024505 [exp]	0	1
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	1.7	0.9092
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	4.0	0.8882
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	4.6	0.8808
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10025599 [exp]	5.1	0.8136
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	6.9	0.8292
					Lus10042751 [exp]	7.7	0.8495
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10013276 [exp]	12.7	0.7123
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	13.2	0.8411
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	14.5	0.8431
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	21.2	0.8187

Compare expression of checked genes

Lus10024505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.