Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19875 92 / 6e-25 unknown protein AT2G31940 86 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008006 [exp] 154 / 6e-49 AT5G19875 90 / 7e-24 unknown protein Lus10006311 [exp] 100 / 1e-27 AT5G19875 83 / 3e-21 unknown protein Lus10034527 [exp] 45 / 1e-06 AT5G19875 52 / 2e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009200 [exp] 103 / 4e-29 AT5G19875 72 / 5e-17 unknown protein Potri.001G231300 [exp] 85 / 6e-22 AT5G19875 69 / 8e-16 unknown protein Potri.009G024500 [exp] 84 / 1e-21 AT2G31940 96 / 2e-26 unknown protein Potri.003G216100 [exp] 84 / 1e-21 AT5G19875 86 / 1e-22 unknown protein Potri.001G009300 [exp] 57 / 4e-11 AT5G19875 51 / 3e-09 unknown protein Potri.003G216000 [exp] 54 / 5e-10 AT5G19875 44 / 1e-06 unknown protein Potri.004G167700 [exp] 49 / 5e-08 AT2G21180 91 / 2e-24 unknown protein Potri.009G129301 [exp] 45 / 3e-06 AT5G42146 45 / 8e-06 unknown protein Potri.009G129200 [exp] 42 / 2e-05 AT2G21180 55 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024507 pacid=23170261 polypeptide=Lus10024507 locus=Lus10024507.g ID=Lus10024507.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGGTACTACTACAGCAACAACAATTACTACTCATCCTACTGGGACTACCTCTTCTCCAACATCTCCAACATCCCAATCCAACTCTACTTCT TCATGGCCATACTCGTCTCTGTTTTGGGATTCTCATGGTACATCCACTACGAATCTGTCATCGAAGACTTGATGAACCAGATCAAGTTCATCCTCATCCT CTCCCCTATCCTTTTACTTCTCCTCCTTCACTGTATTTCAGCAGGAGGTGGTCGTTTCGGTTTCTACCTGCCTTTGCCAGCTGAGAGGGACTCTGTCCAT CGAGCCGGGGGATCTCCGTGGGGGGTTGCTCTGCTTTTGGTCTTTCTTTTGTTCATGATCTCTTACCAGTCTTCTCTTCATGAACGATGGTTCCCTTTGA TTTCCAAATGA
AA sequence Show only first row Show all	>Lus10024507 pacid=23170261 polypeptide=Lus10024507 locus=Lus10024507.g ID=Lus10024507.BGIv1.0 annot-version=v1.0 MAGGYYYSNNNYYSSYWDYLFSNISNIPIQLYFFMAILVSVLGFSWYIHYESVIEDLMNQIKFILILSPILLLLLLHCISAGGGRFGFYLPLPAERDSVH RAGGSPWGVALLLVFLLFMISYQSSLHERWFPLISK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19875			unknown protein		Lus10024507 [exp]	0	1
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10015133 [exp]	2.0	0.8474
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10017048 [exp]	4.6	0.7645
					Lus10028962 [exp]	5.0	0.7427
AT4G39235			unknown protein		Lus10021065 [exp]	17.7	0.7923
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	18.3	0.7245
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	23.2	0.6980
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	33.7	0.7478
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	33.8	0.7887
AT1G18390			Protein kinase superfamily pro...		Lus10016737 [exp]	36.2	0.7034
AT1G52343			unknown protein		Lus10035888 [exp]	43.9	0.6895

Compare expression of checked genes

Lus10024507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.