Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11660 270 / 3e-87 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT5G62020 235 / 7e-75 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT1G46264 179 / 1e-52 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G36990 176 / 5e-52 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT4G17750 158 / 2e-43 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G41690 147 / 2e-41 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT1G32330 152 / 3e-41 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 148 / 5e-40 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 142 / 3e-38 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G16820 143 / 4e-38 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008007 [exp] 508 / 0 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 227 / 1e-71 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10042646 [exp] 182 / 3e-53 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10001133 [exp] 181 / 2e-52 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10019348 [exp] 174 / 2e-51 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10009351 [exp] 164 / 2e-47 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10011065 [exp] 163 / 2e-45 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 163 / 2e-45 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10030956 [exp] 162 / 7e-45 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108100 [exp] 330 / 3e-111 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.012G138900 [exp] 211 / 1e-65 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 200 / 2e-61 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.007G043800 [exp] 186 / 5e-56 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.001G273700 [exp] 179 / 2e-53 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 181 / 4e-53 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 179 / 1e-52 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 173 / 3e-51 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.003G095000 [exp] 163 / 4e-45 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.016G056500 [exp] 155 / 1e-44 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10024508 pacid=23170192 polypeptide=Lus10024508 locus=Lus10024508.g ID=Lus10024508.BGIv1.0 annot-version=v1.0 ATGGGGGAAGGGTTCTTTCTTACGAAAGATAATAAGAAAATCAGTCAGCATCGGGACCACACACCATCATCACTTTGCTTCGTGGATTTGAGAATCTATA CCTGTCAATGCCGTCGTCGCCAGTTGAACCTAGCGGCGAAACCCTCGCCATCGCCGTCGCTGCTGGGAGTCCCGGCCTCCGCGTCCGCTGCTGGGAGTGC CGGCGGCAGGGGCGGCGGCTGCGGTGGTGGAACTGGAGGAACTGCAGATTCCCAGAGAGCTCTGCCGACTCCATTCCTCACCAAAACGTATCAGCTCGTA GATGATCCGGCCGTCGATGATTTGATTTCGTGGAACGATGACGGATCCACCTTCATAGTCTGGCGACCCGCGGAGTTCGCTAGAGACCTGTTGCCTAAAT ACTTCAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTTAATACATACGGATTCAGGAAAGTGGTGCCAGACCGATGGGAATTCGCTAACGACTGCTT TCGGAGAGGAGAGAAATCCCTGCTTCGGGATATCCAGCGGAGGAAGATCTCTGTCGCGACTGCTGTCCCAGCGGGTAATCCCTCGGTGGCCGCGATTGCT ACGGGTCTGACGATCTCTCCTGCGAATTCCGGAGAGGAACAGGTGATCTCGTCCACATCGTCTCCAGCGGCGAATGCTATCTTGCGGACGACGAGCTGCA CGACGACGACAGAGCTTCTGGAGGAGAACGAGAGTCTGAGGAAAGAGAACTCGCAACTCTGCCACGAGTTAACTCAGTTGAGAGGACTGTGCAACAATAT AATGTTGTTGATGAACAATTACTCATCAGGTCAGGTTAACGGGAGTATAAGCAACAACAGTCCGATTCTGTCGGAAGGGAAGCCTCTAGATTTTATGCCC TCAACGAAAGTGGGAGGAGGGACGTCGGAGACAATTGTGGGTAATGACTCTAGAGTAACGTTGGCAGCGGCGGATCCGATCAGCCCGAGACTGTTCGGAG TATCAATAGGAGTTAAGCGAGTGAGGATAGACGAGGAAGAAGAGGAGGAGGAGGTTGAAGAGGAAGAATTGGGGGAAGCGGAGGAAGAGAAGACTAAGGA TCGGGTGTGGGGGCTGCAGGAGACGGCGGGTGAATCAGAGGTGAAATTAAAGCCGTTGGATCGGAATAATAAAGGATGCACTGCCTCTAATGATCAGGAA ACAGCATGGTTGGAGCTTGGGAAATGA
AA sequence Show only first row Show all	>Lus10024508 pacid=23170192 polypeptide=Lus10024508 locus=Lus10024508.g ID=Lus10024508.BGIv1.0 annot-version=v1.0 MGEGFFLTKDNKKISQHRDHTPSSLCFVDLRIYTCQCRRRQLNLAAKPSPSPSLLGVPASASAAGSAGGRGGGCGGGTGGTADSQRALPTPFLTKTYQLV DDPAVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKSLLRDIQRRKISVATAVPAGNPSVAAIA TGLTISPANSGEEQVISSTSSPAANAILRTTSCTTTTELLEENESLRKENSQLCHELTQLRGLCNNIMLLMNNYSSGQVNGSISNNSPILSEGKPLDFMP STKVGGGTSETIVGNDSRVTLAAADPISPRLFGVSIGVKRVRIDEEEEEEEVEEEELGEAEEEKTKDRVWGLQETAGESEVKLKPLDRNNKGCTASNDQE TAWLELGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10024508 [exp]	0	1
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	8.0	0.8755
AT2G27180			unknown protein		Lus10013375 [exp]	8.4	0.9206
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	9.2	0.8770
AT3G53490			unknown protein		Lus10003989 [exp]	9.8	0.8900
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	13.7	0.8857
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	14.1	0.8888
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	15.8	0.8904
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	18.0	0.8933
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	23.1	0.8886
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	23.6	0.8624

Compare expression of checked genes

Lus10024508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.