Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04780 194 / 7e-65 MED21 mediator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008009 [exp] 241 / 2e-83 AT4G04780 202 / 3e-68 mediator 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017100 [exp] 202 / 3e-68 AT4G04780 207 / 2e-70 mediator 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11221 [flax] [poplar] Med21 Subunit 21 of Mediator complex
Representative CDS sequence Show only first row Show all	>Lus10024509 pacid=23170217 polypeptide=Lus10024509 locus=Lus10024509.g ID=Lus10024509.BGIv1.0 annot-version=v1.0 ATGGATATAATTTCCCAATTACAAGAACAAATCGACACGGTAGCGTCTCTTGCTTTTAACTCTATCGGGACGTTGCAGAGAGATGCTCCGCCAGTGCGGT TGTCGTCCAATTACCCTGAGCCGCCGCCAGCCCCCGTCAACCCCGCGGAGGATATTGTGGAGCAGCCTAGGCAGATGGGCACTGCTCTCGTCAAAGCTGC TAAGCAGTTTGATGCTCTGGTGGCTGCACTTCCATTGTCCGAGGGTGGTGAAGAAGCTCAATTGAAAAGGATTGCTGAGCTGCAGGCTGAGAATGATGCT GTAGGTCAAGAACTCCAGAAGCAACTTGAAGCTGCTGAGAAAGAGCTGAAACAGGTTGTGGAGCTATTTGGTCAAGCGACAGACAATTGCTTGAACCTGA AGAAACCAGATTAG
AA sequence Show only first row Show all	>Lus10024509 pacid=23170217 polypeptide=Lus10024509 locus=Lus10024509.g ID=Lus10024509.BGIv1.0 annot-version=v1.0 MDIISQLQEQIDTVASLAFNSIGTLQRDAPPVRLSSNYPEPPPAPVNPAEDIVEQPRQMGTALVKAAKQFDALVAALPLSEGGEEAQLKRIAELQAENDA VGQELQKQLEAAEKELKQVVELFGQATDNCLNLKKPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04780		MED21	mediator 21 (.1)		Lus10024509 [exp]	0	1
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	8.7	0.8259
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	8.7	0.8334
AT5G12240			unknown protein		Lus10026824 [exp]	10.6	0.8266
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	12.0	0.8019
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	12.4	0.8073
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	13.6	0.8197
AT1G67620			Lojap-related protein (.1)		Lus10015822 [exp]	13.9	0.8165
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	15.0	0.8012
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	16.3	0.8168
AT3G27100			unknown protein		Lus10012534 [exp]	16.6	0.7948

Compare expression of checked genes

Lus10024509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.