Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16120 92 / 2e-21 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 88 / 5e-20 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT3G18830 87 / 2e-19 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 85 / 8e-19 AtPLT4 Major facilitator superfamily protein (.1) AT2G18480 82 / 4e-18 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 72 / 2e-14 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT3G51490 70 / 1e-13 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT3G05150 68 / 5e-13 Major facilitator superfamily protein (.1) AT4G04750 67 / 1e-12 Major facilitator superfamily protein (.1) AT1G75220 66 / 3e-12 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006308 [exp] 104 / 9e-26 AT3G18830 142 / 5e-37 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 97 / 3e-23 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 94 / 5e-22 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 93 / 1e-21 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 87 / 1e-19 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10018581 [exp] 87 / 2e-19 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10006971 [exp] 86 / 5e-19 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10031637 [exp] 86 / 5e-19 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 84 / 1e-18 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151725 [exp] 94 / 3e-22 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 90 / 2e-20 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 88 / 6e-20 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 87 / 2e-19 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 82 / 4e-18 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 82 / 9e-18 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G027900 [exp] 74 / 2e-15 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 70 / 7e-14 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 65 / 4e-12 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 65 / 6e-12 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10024510 pacid=23170249 polypeptide=Lus10024510 locus=Lus10024510.g ID=Lus10024510.BGIv1.0 annot-version=v1.0 ATGAAGATATTATCCCATATCAATGAAGGAAGCATCACTCTATATCACAACATCGTCCACTTCATTACTCACAATGTCTCCCAAGTTGTGAGTAAAGTGA GAAACCAGAACCACTATGAAAATATCTTGGCCGTACTGGTTTCTCTGTTCCCTTCTTCCTCTTCAGCCATGGTACATATTGGCGCAATGAACAACCACAA GGCCATAATGAAAGATCTGAAGCTAAGCCACAAGAGCCAGCTCGAGTTTTGCGTCACCTATATGGGTACTGGGCCGTTGATTGGAGGTGCCCTGTTTGCT GGGGTCACCTTCAATTACATCGGTCGCAAGTACACCATGGGGACAGGAGCCGGAGCCCACCTAATTGGATCATTGGTGGTTAGCTTGACCACCAACTTCA TTCCATCAGTGTTTGGGCGAGTGCTCACGGGTGCCGGCATCGGCATGGGTCTAGTTGTGGAGCCCATGTACATAGCTGAAGTGGCGCCCGTACGCAGACG AGACTTCCTTTCCTCCTTCTCTCAGGTATTGATGGCTGTTGGAATGGTTGTGGCGAGCACATTGGAGCGATGCCATCTGAGTTGGATGTTGACGGCTGGC CTGATGGAAATCCCGTCCGGGCTACTCTCAATACTTCTATTCGCCCCGAATGTGATTCCAGACAGTCCTTGTTGGATGGTGGCGTAG
AA sequence Show only first row Show all	>Lus10024510 pacid=23170249 polypeptide=Lus10024510 locus=Lus10024510.g ID=Lus10024510.BGIv1.0 annot-version=v1.0 MKILSHINEGSITLYHNIVHFITHNVSQVVSKVRNQNHYENILAVLVSLFPSSSSAMVHIGAMNNHKAIMKDLKLSHKSQLEFCVTYMGTGPLIGGALFA GVTFNYIGRKYTMGTGAGAHLIGSLVVSLTTNFIPSVFGRVLTGAGIGMGLVVEPMYIAEVAPVRRRDFLSSFSQVLMAVGMVVASTLERCHLSWMLTAG LMEIPSGLLSILLFAPNVIPDSPCWMVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16120		ATPMT1, AtPLT1	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10024510 [exp]	0	1

Compare expression of checked genes

Lus10024510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.