Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 308 / 2e-106 ATOSM34 osmotin 34 (.1) AT1G75050 184 / 1e-57 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 179 / 1e-55 ATLP-3 thaumatin-like protein 3 (.1) AT1G77700 181 / 4e-55 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 169 / 7e-52 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G38660 170 / 6e-51 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 167 / 5e-50 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 165 / 7e-50 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 164 / 4e-49 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G18250 160 / 2e-48 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006302 [exp] 299 / 5e-103 AT4G11650 294 / 3e-101 osmotin 34 (.1) Lus10007034 [exp] 289 / 6e-99 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006690 [exp] 285 / 2e-97 AT4G11650 292 / 1e-100 osmotin 34 (.1) Lus10017170 [exp] 246 / 4e-82 AT4G11650 251 / 2e-84 osmotin 34 (.1) Lus10025629 [exp] 182 / 2e-55 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023897 [exp] 176 / 2e-54 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 170 / 3e-51 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 166 / 3e-50 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032726 [exp] 164 / 1e-49 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102400 [exp] 362 / 8e-128 AT4G11650 360 / 2e-127 osmotin 34 (.1) Potri.001G107600 [exp] 350 / 6e-123 AT4G11650 356 / 1e-125 osmotin 34 (.1) Potri.018G096063 [exp] 284 / 3e-97 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.001G107800 [exp] 279 / 3e-95 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.001G107950 [exp] 276 / 5e-94 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.002G087100 [exp] 175 / 9e-54 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 169 / 1e-51 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 169 / 3e-51 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 165 / 4e-50 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132500 [exp] 167 / 9e-50 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10024511 pacid=23170206 polypeptide=Lus10024511 locus=Lus10024511.g ID=Lus10024511.BGIv1.0 annot-version=v1.0 ATGACCCACTTTCCCATTTTGCTCATCCCCTTGTTTTCCTCCTTGCTACTTTGGGTCTCCATCACCAATGCAGCTGTGATTGACATCTTCAACAACTGTC CTTACACAGTCTGGGCAGCTTCCACGCCCATTGGTGGCGGTCGTCAACTCGACCACGGACAAACATGGACCATCTACCCTCCCGCTGGAACTTCAATGGC CCGCATTTGGGGCCGCCGGAATTGCAACTTTGATGGCAGCGGTAGGGGTTGGTGCGAGACTGGCGATTGTGGTGGGGTCCTCAACTGTCAGGGTTGGGGT GTCCCGCCGAACACTCTAGCTGAGTACGCCCTTAACCAATTCTCGAATTTGGACTTCTACGACATATCGTTGGTGGACGGGTTCAACATTCCTATGATCT TCACCCCCACGGCAAACGTGGGTTCAGGTAACTGCCAGAGCCTAACTTGCACGGCTGACATCAACACACAGTGCCCTGGTGAGTTGCGGGCCCCGGGCGG GTGCAACAACCCTTGTACCGTGTTCAAGACCAATGAGTATTGTTGCACTCAGGGGTACGGGACTTGCGGTCCGACTGGATTTTCAAGATTCTTTAAGGAT AGGTGTCCGACTTCTTATAGTTACCCTCAGGACGATCCAAGCAGTACGTTCACTTGCCCCGGCGGTACCAACTATAGAGTGGTGTTTTGCCCCTATGGCT CTACTCATCCTGACATCGACACCAACAACAACAACAATAACAACAAGAATGTGACGTTGGCTATGGTGACCGAGAAGATCAATTCTGAGTAG
AA sequence Show only first row Show all	>Lus10024511 pacid=23170206 polypeptide=Lus10024511 locus=Lus10024511.g ID=Lus10024511.BGIv1.0 annot-version=v1.0 MTHFPILLIPLFSSLLLWVSITNAAVIDIFNNCPYTVWAASTPIGGGRQLDHGQTWTIYPPAGTSMARIWGRRNCNFDGSGRGWCETGDCGGVLNCQGWG VPPNTLAEYALNQFSNLDFYDISLVDGFNIPMIFTPTANVGSGNCQSLTCTADINTQCPGELRAPGGCNNPCTVFKTNEYCCTQGYGTCGPTGFSRFFKD RCPTSYSYPQDDPSSTFTCPGGTNYRVVFCPYGSTHPDIDTNNNNNNNKNVTLAMVTEKINSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	0	1
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	1.7	0.9862
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	2.8	0.9761
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	3.5	0.9684
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	4.2	0.9634
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	4.2	0.9743
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	4.6	0.9628
AT1G17860			Kunitz family trypsin and prot...		Lus10011090 [exp]	5.0	0.9670
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	5.0	0.9440
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	5.5	0.9567
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	5.7	0.9480

Compare expression of checked genes

Lus10024511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.