Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35600 468 / 4e-164 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT2G17220 459 / 2e-160 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT5G02290 428 / 9e-149 NAK Protein kinase superfamily protein (.1.2) AT1G76360 431 / 2e-148 Protein kinase superfamily protein (.1) AT1G07570 421 / 9e-146 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 421 / 2e-145 APK1B protein kinase 1B (.1.2.3) AT2G39660 411 / 4e-142 BIK1 botrytis-induced kinase1 (.1) AT2G02800 402 / 3e-138 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 400 / 5e-138 PBL1 PBS1-like 1 (.1.2) AT3G28690 397 / 1e-136 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008015 [exp] 741 / 0 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 459 / 2e-160 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 459 / 2e-160 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 447 / 7e-156 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 443 / 3e-154 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10026546 [exp] 461 / 8e-153 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10023794 [exp] 435 / 7e-152 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 432 / 4e-150 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 432 / 6e-150 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G062700 [exp] 531 / 0 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 528 / 0 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 482 / 2e-169 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 478 / 5e-168 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G251900 [exp] 458 / 1e-159 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 443 / 1e-153 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.016G094300 [exp] 437 / 6e-152 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G240400 [exp] 437 / 7e-152 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 437 / 7e-152 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 434 / 1e-150 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024512 pacid=23170234 polypeptide=Lus10024512 locus=Lus10024512.g ID=Lus10024512.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCTTGACTCCTGTTTCAAGTCGTCTGGTACTCCCTCCTCCACCACTTTCACCAATTCTTCTTCTTCAGTCCAAGGCAGATCCTACACAA CCACCGCCATCACCGATTTGTCTGCTGCTACTGCTACTACCACCAGCATGAGCAGTAACAGCAATGGTACGGCCGCCAGAAGCCATTTCTCCGACACCAG CTATGAAGTTGACTCCGAAACCTCCTTGCTCCCCGCCAACGGCAGCGGCCAAATTCTTGAGTGGGCAAACTTGAAAGTTTTCAGCTTGAGCGATTTGAAG TCCGCCACTAAGAACTTCAAATCCGACACCTTGCTCGGTCAAGGTGGGTTTGGTAAAGTCTTCAAAGGATGGGTCGATGAACAAACCCTCTCCCCTTCCA AGCCTGGGATTGGTATGGTCGTCGCCGTCAAGAAATTGAACGATGAAAGTCTACAAGGTTTCGAAGAGTGGCAGGCGGAGATTAACTTTCTGGGGAGGCT ATCGCATCCAAACTTGGTCAAGTTGTTGGGGTACTGTTGGGAGGATAAGGACTTGCTCCTCGTCTACGAGTTCATGGAGAAAGGGAGCTTGGAAAACCAT CTTTTCCGAAGAAATGCGAGGGCTGAGCCACTACCTTGGGACCTAAGACTCAAAATAGCTCTTGGAGCAGCTCGAGGACTAGCCTTCTTGCATGCTTCTG AGAAGCAAATCATCTACCGAGATTTCAAGGCCTCTAATATTTTGCTTGATTCTAAATTCAATGCAAAGATTTCAGATTTCGGGTTGGCGAAGTTGGGGCC GGCAGGCGCTAACACACATGTCACAACCAGGGTTATGGGAACCTATGGTTACGCGGCTCCTGAGTACATTGCTACAGGTCATTTGTATGTGAAGAGCGAT GTGTACGGATTCGGAGTAGTGTTGCTTGAGCTGTTGACAGGATTGAGAGCTCTGGATACAAGTCGGCCGAGTGGTGAGCAGAACCTGGCAGATTGGCTGA AACCGACTCTGTCGAAGAAAAGGAAGGTGAAAAACATAATGGATGAAAGGATTGAAGGGCAATACTCATCAAAAGCAATGCTGCAAGCTACAGATATCAC ATTGAAATGCCTGGAAGAAGACCCCAAAAGCCGTCCGGGTATGGAACAAGTGGTGGAGGCTTTACAGCAGATACAAGCAATGGTTGTTGACAAACCAAAG GCTACTTGTAAAGGTAGTAGTACTTCTTCTGGCTCTAGTTCTAGCCATTCCACAGCTCATCGCCTTCCCAAACCCCCCAACAACCATCATCGCATGGTGC GTTGA
AA sequence Show only first row Show all	>Lus10024512 pacid=23170234 polypeptide=Lus10024512 locus=Lus10024512.g ID=Lus10024512.BGIv1.0 annot-version=v1.0 MGNCLDSCFKSSGTPSSTTFTNSSSSVQGRSYTTTAITDLSAATATTTSMSSNSNGTAARSHFSDTSYEVDSETSLLPANGSGQILEWANLKVFSLSDLK SATKNFKSDTLLGQGGFGKVFKGWVDEQTLSPSKPGIGMVVAVKKLNDESLQGFEEWQAEINFLGRLSHPNLVKLLGYCWEDKDLLLVYEFMEKGSLENH LFRRNARAEPLPWDLRLKIALGAARGLAFLHASEKQIIYRDFKASNILLDSKFNAKISDFGLAKLGPAGANTHVTTRVMGTYGYAAPEYIATGHLYVKSD VYGFGVVLLELLTGLRALDTSRPSGEQNLADWLKPTLSKKRKVKNIMDERIEGQYSSKAMLQATDITLKCLEEDPKSRPGMEQVVEALQQIQAMVVDKPK ATCKGSSTSSGSSSSHSTAHRLPKPPNNHHRMVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	0	1
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	3.5	0.8694
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	4.2	0.8457
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	4.5	0.8720
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	5.5	0.8694
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	6.0	0.8363
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	8.9	0.8469
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	9.4	0.8480
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	9.4	0.8286
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10033111 [exp]	9.8	0.7713
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	9.9	0.8439

Compare expression of checked genes

Lus10024512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.