Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18020 777 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 236 / 7e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 234 / 4e-68 RPF2 rna processing factor 2 (.1) AT1G62910 227 / 2e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 227 / 2e-65 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 226 / 5e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 222 / 2e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 216 / 8e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 216 / 1e-61 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 217 / 6e-61 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014247 [exp] 222 / 7e-64 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 220 / 6e-63 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036020 [exp] 223 / 1e-62 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 216 / 2e-60 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 215 / 3e-60 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 214 / 1e-59 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 209 / 3e-57 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 207 / 6e-57 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10026558 [exp] 206 / 2e-56 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039300 [exp] 886 / 0 AT3G18020 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 232 / 2e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 233 / 3e-67 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 229 / 1e-65 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 226 / 2e-65 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 226 / 3e-65 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G105400 [exp] 231 / 8e-65 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 225 / 8e-65 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 223 / 3e-64 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 227 / 5e-64 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024513 pacid=23170225 polypeptide=Lus10024513 locus=Lus10024513.g ID=Lus10024513.BGIv1.0 annot-version=v1.0 ATGCTCCACGCCGCCAGAAGAAACCTAATCCCTCTTATATCCATTTACGATCCACCTCCAGTCCTCTGCGCTCGCTTCTGTTCGCTAAATGATGAAGTGG AACTCGAACCCATTAGCCTATCTAACACTTGGTACTGGACCAGAAAGATTCATGACCTCTGCAATAACTACCGCAGAGTCGACGAAGCCATCCACCTCCT CGATAGCCTCCGTCTTCGCGGCTACCGCCCGGATTCTCTCAACCTCAGCAGCATTGTCCACGGTCTCTGTCTCGCCGACCGCTTCAAGGAAGCCCACCTC CGGTTTGCTCACTTCCTTGACTCTGGCTGCATCCCTGATGAGCGCACTTGTAATGTCATCCTTGCTAGGTTGCTCAATTCCAGATGCCCAGCTGATACTA TGAGTGTTGTTTCCCGTTTGGTTGATGCGAACCCTCAGTTTGTTCCTTCCTTGGTTAATTACAACCGTTTAATTTACCAATTTTGCGAGGTTTCCCTGCT GAGAGTTGGCCATCGTTTGTTTTTTGATATGGTGAAGAGAGGGCATTTACCAAATGTGGTTTCTTTCACGACTTTGATTGACGGGTACTGTAAGGTGGGT GAAGTTGGTCTCGCGTATAAGGTGTTTGATGAAATGACTGAATATGTTGGGGTGGTGCCCAACTCTCTCACCTATAGTGTGTTGATTCGGGGAGTTTTGA GGAAACGAGATGTTCAGAAAGTGAAAGACTTGATGCCTTTGCTCTGGAAAAGGATGAAGGAAGAAGACGCCCAATCTGTTAATACTGCTGCTTTTGCAAG TTTAATTGATTCATTGTGTAGAGAAGGTTTCTTCAATGATGTTTTTGACATTGCTGAAGGAATGCCACAGGGGAAAAGCGTTGGTGAAGTCTTTGCTTAT GGACAGATGATTGATTCTCTTTGCCGAGTAGGAAAAGGTCACGGTGCTTCAAGGATAGTTTATATAATGAGGAAGAGAGGATTTATTCCAAGCCTAGTCT CGTATAATTCTATTGTCCATGGACTTTGTAAGGAGAGGGGTTGCATGAGGGCATTTCAGTTGTTGAAAGAAGGGATTGAGTTTGGTTACATACCGTCTGA ATATACTTACAAGGTACTGTTGGAAGCTCTCTGTGAGGAAATGGACTTGTGCAAGGCAAAAGAAGTTCTAGAGATCATGTTGAATAAGGATGGGCTGGAC AAAACTAGAATATACAATATATACTTGAGAGCACTTTGTCACATGAATAATCCAACTGAACTCTTGAATGTGGTAGTTACTATGTTACAGGCTAACATTC AGCCTGATGTCTTCACTCTTAACACGGTTATTAATGGATTTTGCAAGTCTGAGAGAGTTGATGAAGCTCTGAAGGTGCTGAATGATATGACTAGTGGAAG GTTTTGTGCTCCTGATGTTGTGACCTTCACTACAGTCATAGGTGGGCTATTAATTGCTGGAAGAAGTCGAGAAGCTCTTGAACTGTTGCATGAAGTAATG CAGAAAAGTGGCGTGAAGCCTAATGTTGTGACATACAATGCAGTTCTTCGAGGTCTTTTCAAGCTTGGGTTGTTAAATGAGGCTATGGCTTTTTTCAATA AAATGACAACTGACAGTGTGGCTGCAGACAGTACAACTTATAGTACAGTGATTAATGGATTGTGTGAATCTGGCCAAATAGAGAAGGGTAAGAGTTTCTG GACGGATGTTGTTTGGCCCTCAAAAAATCACGATGAGTTTGTTTATGCAGCCATTCTCAAGGGATTTTGTAGGTGCGGCAACTTCAATGAAGCATGTCAT TTCCTATATGAATTGGTAGATATTGGAGTCACTCTGAGTACAGTGAGCTACAATATTGTGATTGATGCTGCATGCAAGTTAGGGATGAATAGAGAAGCTT ATCAACTCGTAAGAGAAATGAGAAAGAATGGGTTGGAACCTGATGCGGTAACTTGGAGGATTCTTGATAAATTGCATGACAGTCGAGAAGATGATGTGGT CTAA
AA sequence Show only first row Show all	>Lus10024513 pacid=23170225 polypeptide=Lus10024513 locus=Lus10024513.g ID=Lus10024513.BGIv1.0 annot-version=v1.0 MLHAARRNLIPLISIYDPPPVLCARFCSLNDEVELEPISLSNTWYWTRKIHDLCNNYRRVDEAIHLLDSLRLRGYRPDSLNLSSIVHGLCLADRFKEAHL RFAHFLDSGCIPDERTCNVILARLLNSRCPADTMSVVSRLVDANPQFVPSLVNYNRLIYQFCEVSLLRVGHRLFFDMVKRGHLPNVVSFTTLIDGYCKVG EVGLAYKVFDEMTEYVGVVPNSLTYSVLIRGVLRKRDVQKVKDLMPLLWKRMKEEDAQSVNTAAFASLIDSLCREGFFNDVFDIAEGMPQGKSVGEVFAY GQMIDSLCRVGKGHGASRIVYIMRKRGFIPSLVSYNSIVHGLCKERGCMRAFQLLKEGIEFGYIPSEYTYKVLLEALCEEMDLCKAKEVLEIMLNKDGLD KTRIYNIYLRALCHMNNPTELLNVVVTMLQANIQPDVFTLNTVINGFCKSERVDEALKVLNDMTSGRFCAPDVVTFTTVIGGLLIAGRSREALELLHEVM QKSGVKPNVVTYNAVLRGLFKLGLLNEAMAFFNKMTTDSVAADSTTYSTVINGLCESGQIEKGKSFWTDVVWPSKNHDEFVYAAILKGFCRCGNFNEACH FLYELVDIGVTLSTVSYNIVIDAACKLGMNREAYQLVREMRKNGLEPDAVTWRILDKLHDSREDDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18020			Pentatricopeptide repeat (PPR)...		Lus10024513 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	6.3	0.9290
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	8.5	0.9277
AT1G63810			unknown protein		Lus10026014 [exp]	10.7	0.9232
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	12.1	0.9258
AT5G10010			unknown protein		Lus10005778 [exp]	13.0	0.9010
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	15.2	0.9258
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	15.4	0.9186
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	15.7	0.9201
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	15.8	0.9092
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	15.9	0.9163

Compare expression of checked genes

Lus10024513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.