Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 107 / 1e-29 Remorin family protein (.1.2) AT3G61260 97 / 2e-25 Remorin family protein (.1) AT3G48940 89 / 5e-23 Remorin family protein (.1) AT2G45820 80 / 3e-19 Remorin family protein (.1) AT1G63295 55 / 5e-10 Remorin family protein (.1) AT3G57540 56 / 8e-10 Remorin family protein (.1) AT2G41870 53 / 8e-09 Remorin family protein (.1) AT1G67590 42 / 4e-05 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008014 [exp] 169 / 7e-55 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10008477 [exp] 135 / 4e-40 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10001477 [exp] 131 / 9e-39 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10014785 [exp] 97 / 5e-26 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10039215 [exp] 95 / 7e-25 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10018840 [exp] 95 / 9e-25 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10027460 [exp] 94 / 3e-24 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10017811 [exp] 93 / 4e-24 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10030379 [exp] 83 / 3e-20 AT3G61260 178 / 4e-57 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124400 [exp] 99 / 2e-26 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.014G081300 [exp] 98 / 3e-26 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 93 / 2e-24 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.015G143600 [exp] 91 / 3e-23 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.012G140800 [exp] 85 / 7e-21 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.001G107000 [exp] 80 / 3e-19 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.016G054400 [exp] 54 / 4e-09 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 52 / 3e-08 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.008G144300 [exp] 50 / 1e-07 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.014G027900 [exp] 48 / 5e-07 AT1G45207 442 / 1e-149 Remorin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10024514 pacid=23170224 polypeptide=Lus10024514 locus=Lus10024514.g ID=Lus10024514.BGIv1.0 annot-version=v1.0 ATGGGAGAAGTGGCAAACGTTCGCGTTGCTGAGACATCATTGGAGGCTGCTATCCCTGTGCCAGCTGTTGCTGCTGAGAATAAGAACGAACCTGCCGTCT GCAAGACGAACACCCCCTCCCCTGTATCTGAAAATCAACGTATGCCCTTCCCTCTCTTGCTTCTGAACTTATGTTCCTGCCTTATTCCTGCTTGGACTTA CAAAAGGCTCTGTGCAATCACATCGTGGGAGAACACCAAGAAATCAGCAGTAGAAGCGCAGATAAAGGAACACGAGAAGAAGAGGGCTGAATACGTTGAG AGAACGCAAAACAAGCTAGCTGAAATTCATAAGGAAGCAGAGGAGAATAGGGCACTGATTGAAGCAAATAAAGGTCAAGAGTATGTGAAGATTGAGGAAA CTGCAATCACATACAGAGCCACTGGGTACCCACCAAAGAAGTTTTTCAGTTGCTTAGGTTGCTAA
AA sequence Show only first row Show all	>Lus10024514 pacid=23170224 polypeptide=Lus10024514 locus=Lus10024514.g ID=Lus10024514.BGIv1.0 annot-version=v1.0 MGEVANVRVAETSLEAAIPVPAVAAENKNEPAVCKTNTPSPVSENQRMPFPLLLLNLCSCLIPAWTYKRLCAITSWENTKKSAVEAQIKEHEKKRAEYVE RTQNKLAEIHKEAEENRALIEANKGQEYVKIEETAITYRATGYPPKKFFSCLGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	5.7	0.7698
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	7.7	0.7298
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	8.6	0.7397
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	13.4	0.6613
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	15.8	0.7070
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10032795 [exp]	21.4	0.6883
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	22.4	0.6552
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	22.8	0.7024
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	31.1	0.6514
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	31.3	0.7294

Compare expression of checked genes

Lus10024514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.