Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56170 111 / 1e-31 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT1G54830 111 / 3e-31 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT1G08970 110 / 6e-31 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT3G48590 110 / 1e-30 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G63470 110 / 1e-30 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT5G50480 97 / 5e-26 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 95 / 4e-25 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50490 84 / 3e-21 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50470 84 / 7e-21 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G38140 77 / 3e-18 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008013 [exp] 213 / 3e-72 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10029939 [exp] 111 / 6e-31 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 110 / 6e-31 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 110 / 7e-31 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 110 / 8e-31 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10016750 [exp] 110 / 2e-30 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 109 / 8e-30 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10026780 [exp] 59 / 8e-11 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10026118 [exp] 48 / 4e-07 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124500 [exp] 171 / 5e-56 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.001G106900 [exp] 162 / 1e-52 AT1G54830 112 / 6e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.007G070900 [exp] 114 / 3e-32 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.005G094900 [exp] 114 / 3e-32 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.008G203500 [exp] 112 / 2e-31 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 111 / 5e-31 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G035800 [exp] 111 / 6e-31 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 110 / 6e-31 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.012G098500 [exp] 110 / 6e-31 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.015G097400 [exp] 110 / 7e-31 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10024515 pacid=23170223 polypeptide=Lus10024515 locus=Lus10024515.g ID=Lus10024515.BGIv1.0 annot-version=v1.0 ATGAGGCAGCCAGGGACATACTCAAAGTTCCTGTCGGGAGGTGTAAGCGGGAGGACTGGACCCCACTCACTTCCCCTTGCTAGGATCAAGAAGATCATGA AGTCCGGCGACGACGTCAAGATGATCTCTGGGGAAGCTCCTATCGTCTTCTCCAAGGCGTGCGAGCTCTTCATCGAAGAGCTCACCCGCCGGTCCTGGAT GGTCACCGTCCAGGGCAAGAGGCGGACCCTACACAAGGACGACGTCGCCACAGCCATCGCAACTACCGAGGTCTTTGACTTCCTTGTCGGGTTGGTGGGT ACTAATACTACTAACAACGGCAGTGGTAGTGCTACCAATTCGTCGTCGGTTGGTAACCCTACCGAAGAAGAAGAGTCCACCGATCCAGCCGTGTGGTCAG GATGA
AA sequence Show only first row Show all	>Lus10024515 pacid=23170223 polypeptide=Lus10024515 locus=Lus10024515.g ID=Lus10024515.BGIv1.0 annot-version=v1.0 MRQPGTYSKFLSGGVSGRTGPHSLPLARIKKIMKSGDDVKMISGEAPIVFSKACELFIEELTRRSWMVTVQGKRRTLHKDDVATAIATTEVFDFLVGLVG TNTTNNGSGSATNSSSVGNPTEEEESTDPAVWSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	0	1
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	3.5	0.8998
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10000572 [exp]	3.7	0.8721
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	9.5	0.8478
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	16.0	0.8506
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	23.0	0.8094
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	23.2	0.8354
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	25.6	0.8487
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	30.5	0.8492
AT5G25530			DNAJ heat shock family protein...		Lus10021961 [exp]	33.5	0.7571
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10001776 [exp]	33.9	0.7654

Compare expression of checked genes

Lus10024515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.