Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41140 403 / 8e-124 Myosin heavy chain-related protein (.1.2) AT1G63300 403 / 2e-123 Myosin heavy chain-related protein (.1) AT5G52280 281 / 2e-80 Myosin heavy chain-related protein (.1) AT1G22060 137 / 2e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008012 [exp] 1825 / 0 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 730 / 0 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 645 / 0 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10001482 [exp] 378 / 2e-121 AT1G63300 298 / 5e-92 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 302 / 1e-87 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 300 / 6e-87 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 282 / 2e-80 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 266 / 3e-75 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 143 / 4e-34 AT1G22060 985 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124600 [exp] 553 / 3e-179 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 340 / 7e-101 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 331 / 1e-97 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 238 / 1e-64 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 155 / 5e-38 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 152 / 6e-37 AT1G22060 1031 / 0.0 unknown protein Potri.006G120400 [exp] 97 / 4e-20 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 93 / 8e-19 AT1G22060 117 / 5e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024517 pacid=23170228 polypeptide=Lus10024517 locus=Lus10024517.g ID=Lus10024517.BGIv1.0 annot-version=v1.0 ATGTTCCGTCCAGTGAGGTGGCGGAATGATAAGCACAAGATCAAAGTTGTCTTCAAGTTCCAGTTCCATGCAACTCAGGTCTCAGAACTGAAGAATGTGG AGTCTTTAGTGGTGTCTGTGGTTCCGGGGGATGTTGGGAAGCCAACTGGGAAATCAGAAAAGGCTGCAATTCGGGAAGGAAGCTGCAGTTGGGAATATCC TGTTTATGAGACTGTCAAGTTCAGCCGGGATTCTAAGACCGGCAAGATCAATGACAAAACTTACTACTTCATTTTGTCAACTGGATCAATCAAGAGCAGT ATAGTTGGGGAAGCTTTGGTCGATTTAGCGGCTTATGCACAAGTTGCTAAACCTTCCGTTGTTTCTCTCCCTCTCAAGAACTCAAAGACCAGTGGGGTTT TGCATGTTACAATTCAGAAACTACAGTCAAATGTAGATCAGAGGGAAGAGGGGGAAATTGATGCTGCAAACAAAACTTTGAACACTCTCTTAAGCAATGG TGAGAGTGAGGACACCATCAGCAGCTTTTCTAACGGAGATGTCCTACTGCATACTGCAGATAATATTTCTGAACAGAATGGCATTTGTACTGTTACCAGT GGATCCGAGATTACACTATCCAGTTGTGGCAGTAGCTCCGGGCTTATTAGACCAACAGAAAATGGCTCAAATATGGTCTATGATGGACATCCCCGTACAC AATGTGAATGGTCAGTTGATTCTGATCAGGTCATGAGTGTCGATGGCTCGACAAATAGTTCTCATGGAACCCTCACAGGCGAAAGGTCTCAGCAAATATC AGATGTTGAGGTTGAGAGGCTTAAGGCCGAACTCGTTACAATGTCCAGACAGCTAGATCTTTCAGACCTCGAATTACAGACATTGCGCAAGCAAATTGTG AAAGAAAGCAGGAGGGGTCAGGATCTGTTAAGGGAATTACTGGGATTGAAAGAGGAGAGGGATGCAATCCATGCGGAATGCGAGAAACTCAAGGGCTTCC AGAAAGGTATGGACGAAGCGAGAAGTGGAAACAAGTTGAAATCTGAAGGTGGAGATCCATGGCTTCTTGGAGAAATCAGACAAGAACTGTATTATGAGAA GAACCGGAATATCAACCTCCAGTTACAACTACAGAAGACTCAAGAATCGAATGCAGAACTGTTACTTGCTGTGAGAGAAATGGAAGAATTGTGGGAGAGA AAAGGTACTGAAACATCAGAAGCTCCTTTCAGACATGATGCCTTACCAAGTGAGAGTGATGACGATGATGATGATGAGGCGTTGGAAGAACTTGTTAAGG AGCATACCGATACGCGAGAGACATACATGCTAGAGCAAAGGATTATGGATCTCACTAGGGAGATGGAGATGTACAAGAGAGACAAAGATGAGTTAGAGAT GCAAATGGAACAGCTTGCTCTTGATTATGAGATCTCGAAGCAGGAGAATCACGATCTTTCTTATAAGGTGGAGCAAAGCCAGTTGCAGGAACAACTCCAG ATGCAGTATGAATGTTCACCACCAACTTCCAACGAAAATACATTGGATATCCAGATTGAACGGCTGGAAGAGGAATTGAAGGAGCAACGGATAGAGTACT CCATTTCCTTGACCACGATAAAAGAACTTGAAAACCATGTCGAGATCTTGGAGAGGGAATTAAAGTTGCAAGAAGAAAGAATGTTGCAGCATGAATGCTC ATCAGCTAATGCCAACACTGAGGAACTCGAAGGCCAAATTGAGAGATTGGAGAATGAACTCGAGAAGCAACAAAAGGACTACTCTAGTTCTATGGCCACC ATAAATGAACTTCAAAACCGAATCAAGAGTTTGGAGGAAGAAGCAAAGCTGCAAGAATCAAGTATATTGCAACATGAAGCAGCTGCTGCTAAGACGAAGG AACTCGAAGGCCAGATCGAGAGGTTGGAGAACGAACTCAAGGACCAACAGAATCAAAATTCCGGTTTTTTGGGTACCATAAAGGAACTAGAAACTCATAT CAGTAGCATGGAGGACGAGCTGGAGCAGCAATCCCAGTCGTTTGAAGTTGATCTAGAAACGATCACACGGGAAAGGGTCGAGCAAAAGCAAAGAGCCATC CGAGCTGAGGAAGCCTTACGGCTAACCAGATGGAAAAATTCTAACAAGGCCGAGAAACTGCAAGAGGAATTTAGGACGCTGTCTATGCAGATGGCCTCAA CATTTGAAGCAAATGAGAAGGTGGCTATGAAATCAGTAGCAGAATGTAGCGAAGTCCGGATTCAGAAACGTCAACTGGAAGAAATGCTTCTTAAAGCTAA TTCAGAGCTAAAATATGTTAAGGGTGATTATAAGGAGAAGTTCGTAGAGCTGTCCAACCAACTAAATTTGAAAACTAATCAGGTAGATAAGTTGTTGATT GAAATTGATGACAAGTCGAAGCAGCTCAAATTCCAGAAGCAGCACGAAGAGCAACTTGGTGGAACTTTCACTCAGAAAGTTCAGAAGTTGCAGGTCGAGA TTGAAAATCTTGTGAGAGAAAATGGTATCCTTTCCATACAAGTTGATCAACTGAAGAATGTAAAAGTGGAACTGGAGGAGATGAAGCAGTCAGTGAAGGA CCATGAAGAACTGGTTCAGAAGGGAAATGCGCAGAGGAATGAACTCGTAACGACTATTGCTTTATTGAAGAAAGAAGCAGAGAAATCAGTAGATGATCTA AATACACTGAGATCCTGCAACGAAGAAAAGGAGACTGCACTTAGAACCATCAACTCTGAGGAGGCATCTAACTTGAGGGAGAAAATTACATTGCTCGAGG TGCAGTTGAAGTCAAAGGAAACTGCATTTGAAACGTCAGTAGTTTCATTTATGCAGAAGGAAAGAGATCTCATGATGAAGATTGAAGAGTTAGAGAAGAG AGTGGATGGATTCAACAAGTGCTGTGCAAATGTCCCCGATACCAATGAACCGAAATCGTTCATCATGGACGATAATGACTGTAAGGCGGACGAGTTGGCG AGGGAGCTGTTATCAGTGAAGGAGAGAAATGAAGAAATGGGAAGTGAACTAATGGAGATGCAGGAGAGGTATTCAGAAATAAGCTTGAAGTTTGCAGAAG TAGAAGGTGAGAGACAAAAGCTTTTGATGACAGTAAGGAGCTTGAAGAATGCTAGAAAGGAGCTCAAACTATAG
AA sequence Show only first row Show all	>Lus10024517 pacid=23170228 polypeptide=Lus10024517 locus=Lus10024517.g ID=Lus10024517.BGIv1.0 annot-version=v1.0 MFRPVRWRNDKHKIKVVFKFQFHATQVSELKNVESLVVSVVPGDVGKPTGKSEKAAIREGSCSWEYPVYETVKFSRDSKTGKINDKTYYFILSTGSIKSS IVGEALVDLAAYAQVAKPSVVSLPLKNSKTSGVLHVTIQKLQSNVDQREEGEIDAANKTLNTLLSNGESEDTISSFSNGDVLLHTADNISEQNGICTVTS GSEITLSSCGSSSGLIRPTENGSNMVYDGHPRTQCEWSVDSDQVMSVDGSTNSSHGTLTGERSQQISDVEVERLKAELVTMSRQLDLSDLELQTLRKQIV KESRRGQDLLRELLGLKEERDAIHAECEKLKGFQKGMDEARSGNKLKSEGGDPWLLGEIRQELYYEKNRNINLQLQLQKTQESNAELLLAVREMEELWER KGTETSEAPFRHDALPSESDDDDDDEALEELVKEHTDTRETYMLEQRIMDLTREMEMYKRDKDELEMQMEQLALDYEISKQENHDLSYKVEQSQLQEQLQ MQYECSPPTSNENTLDIQIERLEEELKEQRIEYSISLTTIKELENHVEILERELKLQEERMLQHECSSANANTEELEGQIERLENELEKQQKDYSSSMAT INELQNRIKSLEEEAKLQESSILQHEAAAAKTKELEGQIERLENELKDQQNQNSGFLGTIKELETHISSMEDELEQQSQSFEVDLETITRERVEQKQRAI RAEEALRLTRWKNSNKAEKLQEEFRTLSMQMASTFEANEKVAMKSVAECSEVRIQKRQLEEMLLKANSELKYVKGDYKEKFVELSNQLNLKTNQVDKLLI EIDDKSKQLKFQKQHEEQLGGTFTQKVQKLQVEIENLVRENGILSIQVDQLKNVKVELEEMKQSVKDHEELVQKGNAQRNELVTTIALLKKEAEKSVDDL NTLRSCNEEKETALRTINSEEASNLREKITLLEVQLKSKETAFETSVVSFMQKERDLMMKIEELEKRVDGFNKCCANVPDTNEPKSFIMDDNDCKADELA RELLSVKERNEEMGSELMEMQERYSEISLKFAEVEGERQKLLMTVRSLKNARKELKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	0	1
					Lus10025138 [exp]	1.4	0.8498
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	4.0	0.8703
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	5.0	0.8308
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	6.9	0.7879
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	7.5	0.7964
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	8.1	0.8384
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	9.8	0.8277
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	12.4	0.7135
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	13.4	0.8351
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	18.5	0.7910

Compare expression of checked genes

Lus10024517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.