Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26310 328 / 1e-106 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 323 / 5e-105 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26290 320 / 7e-104 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26330 317 / 2e-102 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT2G02580 303 / 3e-97 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1) AT5G57260 303 / 4e-97 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26320 302 / 9e-97 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G31500 301 / 2e-96 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT1G13110 296 / 1e-94 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25140 296 / 2e-94 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043362 [exp] 729 / 0 AT3G26330 365 / 3e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10002661 [exp] 405 / 5e-137 AT3G26300 323 / 2e-105 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10042815 [exp] 389 / 4e-130 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10028926 [exp] 387 / 3e-129 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10016601 [exp] 384 / 3e-128 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10012767 [exp] 380 / 7e-127 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012879 [exp] 375 / 2e-124 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10009903 [exp] 374 / 2e-124 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10013194 [exp] 370 / 5e-123 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075000 [exp] 410 / 7e-139 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 409 / 1e-138 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 407 / 9e-138 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 402 / 1e-135 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 400 / 9e-135 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 400 / 1e-134 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 392 / 1e-131 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 376 / 1e-125 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 374 / 2e-124 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G089900 [exp] 333 / 1e-108 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024518 pacid=23170216 polypeptide=Lus10024518 locus=Lus10024518.g ID=Lus10024518.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAACAAGTGGCTGCTGCACCCAAATTTCCCCTGATGGTACTAGTTCTCTCAGTTACCATCCTTGCAACTATTATTCTCGTCGTCTCGCAGA CACTTGTACAGAAGAAGAAAAGAACACCACCGGGGCCATGGAAGTTGCCAGTAATTGGAAATCTGCACCAGCTGGTAGCTGGGAATCTCACACCTCATCG CCGCCTAACGGAGTTGGCAACTACATACGGACCACTGATGCACCTTCAGGTTGGAGAAGTCTCGACCGTCATCGTTTCATCTGCCGAATTAGCCAAAGAG TTTCTTCAAACAAAAGATGTAAACTTCGCATCGAGGTCATATCTACCCTCTGCCCACACTCTGTTTTACCAAGGACGAGATATCATCTTCGGGAATGGCG AGTACTGGAAGCATATGAGGAAGATTTGCGTCCAAGAACTGCTCGGGGCCAACCGAGTTCGGTCACTTGTACCAACAATTCATGAAGAGGTTGATCAATT TGTTACATCTATCCAGCAACGTTGTTCATCATTATCATCATCAGGCATAAACATTGGTGGAATGCTCTCCACTCTCAGCAGTTCGCTCATTTCACGTACC GCATTTGGGAAGCTCCGGAAACATACCGACTCCTTTTCGCCGGTCGGGCGACGGATCCTCACCGCAGTTGAAGGTTCAAACCTTTGGGACTTATTCCCCT CCAGTTACTTGGTGCGTCGACTTACCAACACAGAGTCTAAACTGAAGAAGCTTCACAACGAGGCCGATGCCGTTCTCCAGACAATAATCGACGACCATGT AGCAAAAAGATTCGTAAATACTGTGAATGAAGCTGATCATGATGAAGATCTTGTTGATGTGCTTTTGAATCATACCCTTCACCAGGACCTCGAAATTCCT GTCACCCACAATGACATCAAAGCTGTTCTACTCGACATATTTATTGGTGGGAGTGACACTTCTTCCATTACAATTGAGTGGGCGCTCTCGGAACTGATGA GAAACTCTCGAGTTATGGAGAAGGTACAGAAAGACGTAAGGGATCAATTCGACGGAAAAGGAAGGATTGATTACAAGGATCTTGATCAACTTCAATATCT CAAACTAGTTATCAAGGAAACTTTGAGGTTGCACCTTCCTGGCCCTTTACTTCCTCCTAGAGAAGCTCGTGAGGCAACGGTGGTTCATGGTTATCACATA CCGGCAAAAACTAGAGTCGTCATCAATGCATGGGCCATAGCTCGTGACCATCATAACTGGCCCGAACCTGACAAATTTTATCCGGAAAGATTTCTTGATG GTATGTCCTCCAATACTAATTACTCGAAAGGATTGGATTTTTCGTTGATGCCGTTTGGTTCGGGAAGAAGAATTTGCCCAGGAGTACAACTTGGGATGAC TTTTGTAAGTCTTTGTCTTGCAAATTTGCTATATCATTTCGATTGGAATCTCCCAGCCGGTGTTACCTCCCAAAATCTGGACATGTCTGAAGAATTTGGC ATCGGGGTAAAGAAGAAGCAAGACTTATTTCTCATACCAATCCCATACCACCCTAAAGCATTGTAA
AA sequence Show only first row Show all	>Lus10024518 pacid=23170216 polypeptide=Lus10024518 locus=Lus10024518.g ID=Lus10024518.BGIv1.0 annot-version=v1.0 MEEEQVAAAPKFPLMVLVLSVTILATIILVVSQTLVQKKKRTPPGPWKLPVIGNLHQLVAGNLTPHRRLTELATTYGPLMHLQVGEVSTVIVSSAELAKE FLQTKDVNFASRSYLPSAHTLFYQGRDIIFGNGEYWKHMRKICVQELLGANRVRSLVPTIHEEVDQFVTSIQQRCSSLSSSGINIGGMLSTLSSSLISRT AFGKLRKHTDSFSPVGRRILTAVEGSNLWDLFPSSYLVRRLTNTESKLKKLHNEADAVLQTIIDDHVAKRFVNTVNEADHDEDLVDVLLNHTLHQDLEIP VTHNDIKAVLLDIFIGGSDTSSITIEWALSELMRNSRVMEKVQKDVRDQFDGKGRIDYKDLDQLQYLKLVIKETLRLHLPGPLLPPREAREATVVHGYHI PAKTRVVINAWAIARDHHNWPEPDKFYPERFLDGMSSNTNYSKGLDFSLMPFGSGRRICPGVQLGMTFVSLCLANLLYHFDWNLPAGVTSQNLDMSEEFG IGVKKKQDLFLIPIPYHPKAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	0	1
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	1.4	0.9776
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10010870 [exp]	1.7	0.9607
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	3.2	0.9574
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	4.9	0.9637
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	9.5	0.9579
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	11.2	0.9587
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	12.0	0.9600
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10006885 [exp]	12.2	0.9179
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	12.3	0.9519
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	13.2	0.9478

Compare expression of checked genes

Lus10024518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.