Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63420 561 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT5G23850 528 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 516 / 7e-180 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 491 / 3e-170 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 481 / 1e-166 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 454 / 2e-155 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 439 / 1e-149 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 430 / 3e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 379 / 1e-126 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 488 / 9e-169 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 432 / 2e-149 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 431 / 8e-148 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 428 / 1e-145 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10027473 [exp] 409 / 7e-139 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037863 [exp] 384 / 3e-128 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 364 / 1e-120 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 363 / 4e-120 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 348 / 2e-112 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125000 [exp] 588 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 538 / 0 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 491 / 4e-170 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157900 [exp] 483 / 2e-167 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 467 / 3e-161 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 347 / 5e-114 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 86 / 5e-20 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10024519 pacid=23170230 polypeptide=Lus10024519 locus=Lus10024519.g ID=Lus10024519.BGIv1.0 annot-version=v1.0 ATGAGGCTGCAGAGTGACACTACTTTCATGGAGATGATTCTGGCAAAGTTGAAGAAGAAGGGCCCTGCAACTCTCAGAACCCTCTTCTTCCTCTTCTTCT TTCTCCTTCTCTTCATTACCGTCTACATCTCCTACACTTCAACGTTTCTTTCCATCAAACGATCAACGAGTGCGCCAGTTTCCAGCAGTACTACTCGTGT TATCATCCCAGTAATTCAACCCCATGAAAAGAATCTGTCAGTTACTATTACCACCCAGTTCACCCCCAAAATCCAAACTTTTCCTCCAAGGGTACTCGAA TCCCCTGAAATTGACTGCTCTGTAGTCGACCAGCAATCGAAAAACCGAACTCAAACATGCAACGGAGGAAGCTACCCAGAGGAAGCAACAACAACATCGG AGGAGTCGAATGGCAGCGAATGTCCAAGCTACTTCAAGTGGATTCACGAGGACCTGAAGCCGTGGAAGGCCACTGGAATCACGAGGGAAGCGGTGGAGAA GGCCAGAGGAACTGCCAATTTCCGGCTGGTGATACTAAAAGGGAAATTGTATGTGGAGAAATACAAGAAGTCGATACAGAGTAGAGACAAGTTCACAATC TGGGGCATTTTGCAGCTTCTCAGGAAGTACCCTGCGAAGCTGCCTGATTTGGAGCTCATGTTTGACTGCGACGACCGCCCCGTCATCCGATCGGAAGATT ACAAGGAGGCGGCGGCCACCCTTCCGCCGCCGTTGTTTCGGTACTGCGGTGACAGGTGGACCATGGACATCGTGTTTCCTGATTGGTCCTTCTGGGGATG GACGAAATGGGAAGAAAGGGAGCCTTATGCTTACTGGAAAGGAAACCCTTTTGTTGCAGAGGATAGGAAGGATCTCCTCACTTGCAATGTCTCCCATGAA CACGACTGGGGTGCTCGCCTCTTCATCCAGGATTGGATCAAAGAATCCCAACAAGGATTCAAAGAATCAAGTTTGGCGAACCAATGCAAATACAAGTACA AGATCTACATCGAAGGTTATGCGTGGTCTGTGAGTGAGAAGTACATCTTGGCATGCGATTCAGTTACTTTCCTAATCAAGCCTTACTACTATGATTTTTT CACAAGGAGCTTAGAGCCTCTCGTTCACTACTGGCCGGTTGACAAAAGAGACAAATGTCGATCTATTAAGTTTGGTGTAGAGTGGGGGAACCAAAACATG GACAAGGCACGAGCAATTGGAAAAAGAGCTAGTGATTTCATCCACGAAAATGTCAACATGGACCACATCTATGACTACATGTTTCACTTGTTAAGTGAGT ACGGAAAGCTCCAGAGGTTTGAGCCTCGAGTCCCGACCACGGCTGTCGAGGTTTGCCCGGAGAGCATGGCATGTGCCGGAGATGAGGAGGATGTGTTGGG GTTAGGGTTGATGAAGAAGTTTATGCTAGAGTCTCTGGTGAAGAGTCCTTCTTTGACAAGCCCATGTGAGATGGTGCCACCTTTTGAGACCAAAGATTTG GAGAGGTACTACAAGAGAAATCTTAACACTATTAGGAGAGTGCATAAATGGGAGAGCCAATACTGGCAAGATAATAAAACCCATGCATAG
AA sequence Show only first row Show all	>Lus10024519 pacid=23170230 polypeptide=Lus10024519 locus=Lus10024519.g ID=Lus10024519.BGIv1.0 annot-version=v1.0 MRLQSDTTFMEMILAKLKKKGPATLRTLFFLFFFLLLFITVYISYTSTFLSIKRSTSAPVSSSTTRVIIPVIQPHEKNLSVTITTQFTPKIQTFPPRVLE SPEIDCSVVDQQSKNRTQTCNGGSYPEEATTTSEESNGSECPSYFKWIHEDLKPWKATGITREAVEKARGTANFRLVILKGKLYVEKYKKSIQSRDKFTI WGILQLLRKYPAKLPDLELMFDCDDRPVIRSEDYKEAAATLPPPLFRYCGDRWTMDIVFPDWSFWGWTKWEEREPYAYWKGNPFVAEDRKDLLTCNVSHE HDWGARLFIQDWIKESQQGFKESSLANQCKYKYKIYIEGYAWSVSEKYILACDSVTFLIKPYYYDFFTRSLEPLVHYWPVDKRDKCRSIKFGVEWGNQNM DKARAIGKRASDFIHENVNMDHIYDYMFHLLSEYGKLQRFEPRVPTTAVEVCPESMACAGDEEDVLGLGLMKKFMLESLVKSPSLTSPCEMVPPFETKDL ERYYKRNLNTIRRVHKWESQYWQDNKTHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	0	1
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	1.0	0.9408
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	1.4	0.9245
					Lus10021100 [exp]	3.0	0.9146
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	3.5	0.9122
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	8.5	0.8941
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10000504 [exp]	8.7	0.8567
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	9.2	0.9092
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	10.7	0.8630
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	11.0	0.8803
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	11.8	0.8891

Compare expression of checked genes

Lus10024519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.