Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65470 499 / 3e-165 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003491 [exp] 1155 / 0 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10004453 [exp] 1070 / 0 AT1G65470 632 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10008729 [exp] 630 / 0 AT1G65470 616 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G077800 [exp] 630 / 0 AT1G65470 346 / 2e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Potri.002G209795 [exp] 510 / 2e-171 AT1G65470 326 / 2e-100 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12253 [flax] [poplar] CAF1A Chromatin assembly factor 1 subunit A
Representative CDS sequence Show only first row Show all	>Lus10024521 pacid=23169602 polypeptide=Lus10024521 locus=Lus10024521.g ID=Lus10024521.BGIv1.0 annot-version=v1.0 ATGGCGGAACTGCCTAACATTCCGATTGACCTTCTCAGTCCTCCAAAACCTAGCTGTCAGAGTCGCCCTGCTAAATCCCTCAAACGGAAACGACAGTCGC CGTCCCCTTCCCTTCTCAACTTGACACCTGACCAGAAAGACTATCAGGCTCAGCTGCTGCGCGAGGAGTTGAGCTCTCTCATTGTCTATTACCACGAAAT CGTGAGTAACAAGGTCGGATTTGGTTTGGGCCTTGATTTTGCCGGAATGGAGTGCAAGACGGTAAACGGAATGGTGGCTCTGTTGATTGAGGAGAGTCAA CTCCCGTTAGGTAAGCTTATTGAGCAGCTAAAGAGCAGATTGGAGGTAGCTCAGCTCAAGAACGAAACCACGTCTACTGCAGCAGGGGTGAAGAGCGCAG TGCTGTTTGTGGGCCAGAGAATTGCATACGGGGTGACCAATTTAGATGTTGATGTGCTAGAAGACGATACCCAATCTTGTCTGTGGTGCTGGGAGACAAG GGACCTGAAGTTGATACCAAAGTCTTTGCGCAATGCTCTTAAAGTTAGACGTCAATGTCGGAGGAGGATCCATGAGAGAATTAATGCCGTTTCTGCCATG ATTACTGCACTTCAAAAGATGGAGGTAGATGAAAATTACAGAAGTGGTTTGACGAAGGCAGCTGAGAAGCTTGGTAAAGCATTAGGTGAAAGTGATATTC GGGCATACATGGATGGGATGTTGCTGAAGAATAGTGCAGAGATGAATGATAAAGAAGTGAAGCGAGAAGAAAAGGTACTTGTCAGAGAACTTGAGAAAAA TAAGCGAGCATCCGAGAAAGAGAAAAGGGGAATAGATCTTGAAGTTCAAAAAGAACAGCAACGAATAGAAAGGGAGCAAAGAAAATTACAGGAGGAAGCT GAAAAAGCTGAAAAGCGCCGTGAGAAAGAAGAGTCTGAATTGCATAAGCAGTCGAGAAAACAGCAAGAAGAAGCAGAAAGGGAGAAAAGGCGCCGTCAGA AGGAAGAAACTCAGTTGAAAAATAAGATTTCTGTCCAGAAGCAAGCTTCAATAATGAAACAGTTTCTAAAACGTAATGAAACAGATTCTGCACGGCAAAA TGACCGGTCTTCTGCTTTTGTTAGTTCCTTCACATTGCCGGCCAAAGATCATGAGAGGATACCTATGGTTGTTATGCAACAGATGGACACTACTCTTTCG TCAAATGATTGTATTGGAATTGATGAAATTCGCAAGTCACATATGTCTTCCTGGTGTCACCAGGATCAATCTCTTCATTCAAGCAGAAAACGACATTGGA GTATACGGCAGAAACCAAAGAGTAACTTAATTAAGGAGCTCAAGCTAACTTCTAGGAGGGATCTAGAAAATGACGACGAGTTAAGTATAGAGGAACTTGT AAGTCCATGTGCAGAGCATGCCTATGATGATGGGTCGTGCTTTGCCCTTCCTAGCAAGTCTGTGACAGATGTTAAAAGGTGCCATCGGAAGAAACAGTTA CTGCAGTTTGACAAGTGCCATCGACCAGCATTTTATGGCATTTGGCCTACGAGAAGTACTGTTGTTGGACCGCGCCAACCTCTGAAAATGGATCCTGAAT TAGATTATGAAATGGAAAGTGATGAAGAATGGGAAGAGGAGGATCCAGGAGAAAGCCTCTCGGATTGTGATAAGGATGAGGATGATGAAGAGGAACGTCT AGATGAGGCAAGTGCAAGAGCTGATGATGAAGAGGATGGTGAAGATGGCTTTTTCGTACCTGATGGTTATTTCTCAGAAAATGAGGGGGTTCAAATTGAC AGAATGGACATTGATGTGTCAGTTGAGGAAGCAAAGAGTAGTTGTAACCAAGACTCTGAGACTGGGGTGTTCTATGCTTTGATTCAACAGCAGAAGCATC TAAACAATTTAACTGAAAGTGCACTCAAGAAAAACCAGCCTTATTTTATATCGAATCTATTTCATGAGAAGGTTATATTAGTAGGGTGTGCAGATCATAG TGGGATATCAAAGGCGGAAAAGATGTGCTTACAGGGTCTTCGTCTACGTGCATTCCCTGGTGGACAAGCAATTGATATATCAATTGACGATGTACAAATG GAGGATCAAGATGATTTTGTACCGAGTGCCAAGATTGTTTCGAAGGCCACGACTCCCCCACTGCACGACTCAGATATGCCTGCCGTTATATTTGCTGTCC AGGCGTGCTCTCAAAGTATTGGGAAAGTCCTTGAAACTTTGCAACAGAAGTTCCCTACAGTGTCCAAGTCGCATCTGAAAAGTAAAGTCCGTGAGATATC TGATTTTGTGGACAACAGATGGCAGGTGAAGAAACAAGTTCTGGACCAGGCTGGAGTGTCTACTTCACCAGGTTTTGTTTCGAATTTGAATGGCTTATTC TGA
AA sequence Show only first row Show all	>Lus10024521 pacid=23169602 polypeptide=Lus10024521 locus=Lus10024521.g ID=Lus10024521.BGIv1.0 annot-version=v1.0 MAELPNIPIDLLSPPKPSCQSRPAKSLKRKRQSPSPSLLNLTPDQKDYQAQLLREELSSLIVYYHEIVSNKVGFGLGLDFAGMECKTVNGMVALLIEESQ LPLGKLIEQLKSRLEVAQLKNETTSTAAGVKSAVLFVGQRIAYGVTNLDVDVLEDDTQSCLWCWETRDLKLIPKSLRNALKVRRQCRRRIHERINAVSAM ITALQKMEVDENYRSGLTKAAEKLGKALGESDIRAYMDGMLLKNSAEMNDKEVKREEKVLVRELEKNKRASEKEKRGIDLEVQKEQQRIEREQRKLQEEA EKAEKRREKEESELHKQSRKQQEEAEREKRRRQKEETQLKNKISVQKQASIMKQFLKRNETDSARQNDRSSAFVSSFTLPAKDHERIPMVVMQQMDTTLS SNDCIGIDEIRKSHMSSWCHQDQSLHSSRKRHWSIRQKPKSNLIKELKLTSRRDLENDDELSIEELVSPCAEHAYDDGSCFALPSKSVTDVKRCHRKKQL LQFDKCHRPAFYGIWPTRSTVVGPRQPLKMDPELDYEMESDEEWEEEDPGESLSDCDKDEDDEEERLDEASARADDEEDGEDGFFVPDGYFSENEGVQID RMDIDVSVEEAKSSCNQDSETGVFYALIQQQKHLNNLTESALKKNQPYFISNLFHEKVILVGCADHSGISKAEKMCLQGLRLRAFPGGQAIDISIDDVQM EDQDDFVPSAKIVSKATTPPLHDSDMPAVIFAVQACSQSIGKVLETLQQKFPTVSKSHLKSKVREISDFVDNRWQVKKQVLDQAGVSTSPGFVSNLNGLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	0	1
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	1.0	0.9765
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	1.4	0.9724
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	1.7	0.9669
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	4.9	0.9668
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	6.2	0.9265
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	6.5	0.9615
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	6.9	0.9522
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	7.7	0.9519
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	8.1	0.9652
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	10.4	0.9522

Compare expression of checked genes

Lus10024521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.