Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42260 78 / 6e-17 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 (.1) AT3G57860 72 / 9e-15 GIG1, OSD1, UVI4-LIKE OMISSION OF SECOND DIVISION, GIGAS CELL 1, UV-B-insensitive 4-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008728 [exp] 362 / 2e-126 AT2G42260 93 / 7e-22 POLYCHOME, uv-b-insensitive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050300 [exp] 100 / 6e-25 AT2G42260 147 / 2e-43 POLYCHOME, uv-b-insensitive 4 (.1) Potri.006G057800 [exp] 98 / 3e-24 AT2G42260 148 / 1e-43 POLYCHOME, uv-b-insensitive 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024522 pacid=23169577 polypeptide=Lus10024522 locus=Lus10024522.g ID=Lus10024522.BGIv1.0 annot-version=v1.0 ATGCCTGAATCCAGAGACAGATTGGTGAGGGAAGTCGACTTCGCTGTCCTTTTTTCCCGTCAACGTGCAGCGAGGATGTACTCCGATGAGATGGAAGTGG CACTGTACGGATCTCTACGCCCACAGCCGGAGCCGGTGGAGCGACCTGGCACCATATTTGGACCTGGGTTTCGGCCCACCAGAAATGGTAGGAATCGTCA CCCATCCAGAGGGATTGAAAATACTCCCATCCGGACAGCCAGGCGTGAGAATTGGAGCCCTCGCCACCGCAGACGCACTTCGGACAACATCTTGCCTTCT TGGTACCGGAGGACTCCTCTTCATGACATTTCTTCCATTACCCGGGCTGTATGTGGTGGGGTATGGGTTTATGGTCTTTGTGTTTTGTTCTCACCATTGG TGCCGTTTCTTTCTTTTGGGGTAGCAGAGGCAATAGAAAGGCGGAGAGGACATTTGGGAGACGTTGAGGGCCACGAACTTGGAAGCCCTGTTATAGCAGG TATCAGAGGTTCTGACTCTTTCGCAACTCCACTGGTTGAGACAAAAAAGTTCATGTCTCCATCTACCGCATCCGGAGTCAGACGCAGTCCTCGCCCTAAA CTCGGTAAACTTCCGAAGATTATCAATGAGATTGCAAATCAACCATCCCCAGGAACAGAATGGTTAACACCGGAGAAAAAGCTACTGAACTCCATTGACA AAGTTGAGAAAGTAGTGAAGGAGGAATTGGAGAAGCTCAAGAGGACCCCTGCTGCGAAAAGGGCAGAAAGGGAAAGAAGGGTCCGGACTCTGATGTCCAT GCGGTGA
AA sequence Show only first row Show all	>Lus10024522 pacid=23169577 polypeptide=Lus10024522 locus=Lus10024522.g ID=Lus10024522.BGIv1.0 annot-version=v1.0 MPESRDRLVREVDFAVLFSRQRAARMYSDEMEVALYGSLRPQPEPVERPGTIFGPGFRPTRNGRNRHPSRGIENTPIRTARRENWSPRHRRRTSDNILPS WYRRTPLHDISSITRAVCGGVWVYGLCVLFSPLVPFLSFGVAEAIERRRGHLGDVEGHELGSPVIAGIRGSDSFATPLVETKKFMSPSTASGVRRSPRPK LGKLPKIINEIANQPSPGTEWLTPEKKLLNSIDKVEKVVKEELEKLKRTPAAKRAERERRVRTLMSMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	0	1
AT5G52950			unknown protein		Lus10027565 [exp]	1.0	0.9024
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	3.5	0.8495
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	3.9	0.8419
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	6.3	0.8431
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	7.3	0.8326
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	8.1	0.8145
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	11.7	0.8356
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	13.7	0.7750
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	14.4	0.8124
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	15.1	0.8406

Compare expression of checked genes

Lus10024522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.