Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042586 [exp] 60 / 2e-11 ND / Lus10008292 [exp] 55 / 2e-09 ND / Lus10015577 [exp] 39 / 0.0003 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024524 pacid=23169609 polypeptide=Lus10024524 locus=Lus10024524.g ID=Lus10024524.BGIv1.0 annot-version=v1.0 ATGACCTCTCGTTCTCTCCGCCCTCTCCCCTTCCTCTCCTTTGCCTATGCTCTTTTTCCCATCTCCTTGCTTCTGGATTTCCCGCCGTCACTTCCAGTTT CTTCACTTCATCTGCTAGGCGAACTTGATCAAATCGATCACGATCCGTCAACATTCACCCATTATTGGGTTCACCTTCATTCTACATGTATCGCAATCCT CAAAATCCAGGATCTATGCTCTTCTTATTCTTTCCCTTGTTCCTGCTCTCGTTCAGATTTACCGGACATGTCCTTATTTGACAGGAAACGTCCCCGTGAT GTGGATATGGAAGGAGATGATGGGGCTGACTCTTCCTCAACACCGAAGAAGATGAGATTGGATGTTGCTCCCCTAACTATGGATGATTTCCCTGCTCACG TTATGGACAAGGAACTACTTCCTGATGATTTGCTTGATAAAAACCCAGATATGATGGCAGTTTCTGCTACCTTGTCTACTTTGATGGTGGAGGCGGCCCA CCTTGAGAGGCCCCCTGACTCATCGTGA
AA sequence Show only first row Show all	>Lus10024524 pacid=23169609 polypeptide=Lus10024524 locus=Lus10024524.g ID=Lus10024524.BGIv1.0 annot-version=v1.0 MTSRSLRPLPFLSFAYALFPISLLLDFPPSLPVSSLHLLGELDQIDHDPSTFTHYWVHLHSTCIAILKIQDLCSSYSFPCSCSRSDLPDMSLFDRKRPRD VDMEGDDGADSSSTPKKMRLDVAPLTMDDFPAHVMDKELLPDDLLDKNPDMMAVSATLSTLMVEAAHLERPPDSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024524 [exp]	0	1
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	3.5	0.8355
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	13.7	0.7714
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	27.3	0.8228
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10027542 [exp]	33.5	0.8032
AT4G37030			unknown protein		Lus10011021 [exp]	34.4	0.8190
					Lus10011527 [exp]	39.8	0.8156
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	40.2	0.7744
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10042663 [exp]	40.7	0.7779
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10039728 [exp]	50.4	0.7838
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	76.0	0.7968

Compare expression of checked genes

Lus10024524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.