Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36950 762 / 0 DEGP10 DegP protease 10 (.1) AT1G65630 572 / 0 DEGP3 DegP protease 3 (.1) AT1G65640 499 / 5e-174 DEGP4 DegP protease 4 (.1) AT3G16550 455 / 3e-156 DEGP12 DEGP protease 12 (.1) AT3G16540 447 / 7e-152 DEGP11 DegP protease 11 (.1) AT5G40560 432 / 3e-148 DEGP13 DegP protease 13 (.1) AT5G40200 432 / 1e-145 DEGP9 DegP protease 9 (.1) AT2G47940 394 / 2e-130 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G51150 179 / 9e-53 DEGP6 DegP protease 6 (.1) AT5G54745 166 / 3e-48 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008726 [exp] 682 / 0 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10032163 [exp] 434 / 2e-146 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 434 / 2e-146 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10008727 [exp] 365 / 8e-125 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10005931 [exp] 200 / 6e-58 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10040905 [exp] 57 / 1e-09 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008781 [exp] 53 / 4e-07 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 49 / 9e-06 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10007262 [exp] 45 / 0.0001 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079900 [exp] 813 / 0 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.015G073100 [exp] 449 / 5e-153 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.012G077900 [exp] 442 / 6e-150 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.002G207200 [exp] 396 / 2e-131 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 390 / 4e-129 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.013G018300 [exp] 52 / 9e-07 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.001G348800 [exp] 51 / 2e-06 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.011G083300 [exp] 47 / 2e-05 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.004G129200 [exp] 47 / 4e-05 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10024525 pacid=23169588 polypeptide=Lus10024525 locus=Lus10024525.g ID=Lus10024525.BGIv1.0 annot-version=v1.0 ATGTGGTGCTCTTCGATTCGAGCTGCGCGAAAGCTATGCTCCTTCTCTATTATCAACCACCCATGTCTTAGACAAAGGCTAGGTACTTTCTTCTTTGTAT CGCCCAAGCTCGTGCTCCCATTGTCAACCAACAACCATCCAGCAGCAGCAGCAGCAGCATCAATAGTTCCATTCCCGCCTTTCCTTGGCAGTCGCCACCA TCTATGTTATTCCACTTCCGCCTCCGACGAGCCATCCTGGAGCTGCAGTTCAAATGTGGCCGTCGAACTGGCTTTGGTATCCGTCGTCAAGATCTTCACG GTCTTCAGCACCCCCAATTATATCCTTCCGTGGCAGAATAAATCCCAACGTGAAACCACAGGCTCCGGGTTCGCTATTCCTGGGAAAAGGATTCTTACAA ATGCTCATGTGGTGGCTGATCACACTTTTGTAATGGTGAGGAAGTATGGCTCCCCTACCAAATATAAAGCACAAGTTCAAGTTGTTGGGCACGAATGTGA TTTAGCCGTTCTGGTTGTTGAAAATGATGAGTTTTGGGAGGGAATGACTTCCTTAGAGCTCGGCGAAGTCCCATGTCTACAGGAATCCGTCGCAGTTGTT GGCTATCCCCAAGGTGGGGACAATATTTCTGTTACCAAGGGTATTGTCTCCAGAGTTGAACCGACTCAGTATGTCCACAGTGCTACCAATTTGATGGCAA TACAGATTGATGCAGCTATTAATCCTGGGAACAGCGGCGGTCCTGCAATAATGGGTGAAAAGGTTGCTGGCGTAGCATTTCAAAACCTTTCAGGTGCTGA GAATATTGGGTATATCATCCCAGTTCCCATAATTAGGTCATTTATATCAAGTTGGGAAGAAAATGGAGAGTATGTTGGATTCTGCTCCATGGGTTTGTCA TGCCAGCCAACTGAAAATGTTCAGCTCAGGAAGCACTTTGGAATGTCGCCTGGGATGACTGGAGTACTCGTAAGCAAAATTAATCCTCTCTCGGATGCAC ACCAGATTCTGAAAAAGGATGATATTCTGCTTGCATTTGATGCAGTCCCTATAGCAAGTGATGGAACAGTGCCTTTCCGAAACAGAGAACGTATCCCTTT CGACTATTTAGTATCCATGAAGAAACCGAATGAGACAGCTTTAGTCAGAGTTTTGAGGGGTGGACAGCAGCATGAGTTCAGAATCACCGTCAGACCACTG CAGCCACTGGTACCAGTTCATCAGTTTGATAAGCTACCGAGTTATTACATATTTGCTGGGTTGGTATTTGTTCCACTCACCCAGCCATTTCTACACGAAT ATGGAGAAGATTGGTATAATGTGTCTCCTCGTCAATTGTGCGAGCGTGCGTTGAGGGAGCTTCCAAAGAAGGCGGGTCAACAACTTGTCATTCTCTCTCA GGTACTGATAGATGATATAAATACCGGGTACGAGCGTCTTGCAGAACTACAGGTGAAGAAAGTGAACGGGATAGAGGTTGAGAATCTGAGGCAGTTGAGG AAAGTGGTTGAGGAGTGCAATGAAGAGTTTGTGAGATTTGATTTGGATGAGGAAAGGGTGATGGTGGTTAGCTATGAGTGTGGGAAAGCAGCTACTTCCA GAATATTGAAGCGTCACAGAATACCTAGCGCTATGTCCACTGATCTTGCTGAACAAGAGTGA
AA sequence Show only first row Show all	>Lus10024525 pacid=23169588 polypeptide=Lus10024525 locus=Lus10024525.g ID=Lus10024525.BGIv1.0 annot-version=v1.0 MWCSSIRAARKLCSFSIINHPCLRQRLGTFFFVSPKLVLPLSTNNHPAAAAAASIVPFPPFLGSRHHLCYSTSASDEPSWSCSSNVAVELALVSVVKIFT VFSTPNYILPWQNKSQRETTGSGFAIPGKRILTNAHVVADHTFVMVRKYGSPTKYKAQVQVVGHECDLAVLVVENDEFWEGMTSLELGEVPCLQESVAVV GYPQGGDNISVTKGIVSRVEPTQYVHSATNLMAIQIDAAINPGNSGGPAIMGEKVAGVAFQNLSGAENIGYIIPVPIIRSFISSWEENGEYVGFCSMGLS CQPTENVQLRKHFGMSPGMTGVLVSKINPLSDAHQILKKDDILLAFDAVPIASDGTVPFRNRERIPFDYLVSMKKPNETALVRVLRGGQQHEFRITVRPL QPLVPVHQFDKLPSYYIFAGLVFVPLTQPFLHEYGEDWYNVSPRQLCERALRELPKKAGQQLVILSQVLIDDINTGYERLAELQVKKVNGIEVENLRQLR KVVEECNEEFVRFDLDEERVMVVSYECGKAATSRILKRHRIPSAMSTDLAEQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	0	1
AT1G73470			unknown protein		Lus10042285 [exp]	1.4	0.9017
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	7.1	0.8745
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	7.5	0.8929
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	9.8	0.8724
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10024381 [exp]	11.6	0.8780
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	14.1	0.8087
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	14.9	0.8717
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	16.4	0.8654
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	16.6	0.8744
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	18.3	0.8501

Compare expression of checked genes

Lus10024525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.