Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35970 1340 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 359 / 5e-112 DNA-binding protein, putative (.1) AT5G47010 209 / 2e-55 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 156 / 7e-39 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 147 / 1e-35 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT1G05460 137 / 9e-33 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 124 / 1e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 116 / 2e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 115 / 4e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 114 / 2e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024974 [exp] 1045 / 0 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024975 [exp] 777 / 0 AT5G35970 524 / 9e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 365 / 8e-114 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10042360 [exp] 275 / 1e-81 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10003024 [exp] 211 / 7e-56 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 211 / 9e-56 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10010991 [exp] 132 / 4e-31 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10037303 [exp] 130 / 4e-30 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 126 / 2e-29 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073900 [exp] 1402 / 0 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 361 / 1e-112 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.001G148100 [exp] 209 / 4e-55 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 208 / 6e-55 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.017G056700 [exp] 143 / 7e-35 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G180200 [exp] 142 / 4e-34 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.008G143000 [exp] 135 / 1e-31 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 134 / 2e-31 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 132 / 6e-31 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G155400 [exp] 127 / 7e-30 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024527 pacid=23169586 polypeptide=Lus10024527 locus=Lus10024527.g ID=Lus10024527.BGIv1.0 annot-version=v1.0 ATGGAAACGGCCTTCGCGCTCCCTCATCATCCGCCGCTAGTCTCGCATTCCAGTTTGCCGGACGCCCTCACTCGCCCTCACTTGCTCTTCCTCCGCCACA AAAACCACCACCACAACTGTTCTCTCAGATGTATCCAAGTCCAATCCCAGCACCAGCAGCCGCCTCCCGCTCCCGTTCCCGCTTCCGCCACCACCACCAC CACCGGCAGGAGGAAGTGGAAAGCGAGGAGGAACTTCACCACTCGAGGGAAGACCTTCAAGACTAAAAGTACCGCTGCTCCCGAAGCTGTAGCGCCGCCG CACAAGGATAAGGACAAGGAGAAGGAGGAGGTGGATGTGAGTATGGAGGCTCTTAATCAGAAAGGAGACCCGCTGGGACGGAAGGATCTCGGAAAGAGCG TTGTCAAGTGGATATCCCTTGGCATGAAGGCAATGGCGTCCGATTTCGCTACTGCAGAGGAGCAGGGGGAGTTCTCCGAGCTCAAACAGAGGATGGGACC TGGTTTGACATTCGTTATGCAGGCCCAGACTTACCTCAATGCCTTTCCTATGCCTCTAGGGCTGGAGGCTGTTTGTTTAAAGGCCTGTACGCATTACCCT ACACTTTTTGATAATTTCCAGAGAGAATTGCTGGATGTTCTTCGTGGGATGCAGGAAAAAGGTTCCATTCAGGATTGGCGTCAAACCGAGTCCTGGAAGT TGTTCAAATACCTTGCCAATTCAGCTCAGCATAGACAAATTGCGAGAAAAATAACTCAACCAAAACGGGTACAAGGAGCTTTAGGAATGGACTTGGAGAA GGCCGAGGCCATACAAGAGCGAATTGATGATTATGTTAAGCGAATGTCAGAATTACTCCTCGTGGAGAGGGATGCTGAAGTGGGGTTTACTCAGGAGGAA TTGAATGTTGTTCCCACACCTGACAAAACCTCTGATTCTAGTGGCCCCATTGAGTTCTTGGTTACTCACGGCCAGGCTCAACAAGAGATCTGTGACACCA TCTGCAACTTGTATGCAGTGAGCAGCTCTACAGGATTAGGAGGAATGAACTTGGTTTTGTTTAGGATTGATGGGAATCATCGGTTACCACCTACAAACCT TACGCCTGGTGATATGGTCTGCGTGAGAACATGCGATAGCAAAGGCACGGTTGAAACTTCTTGTCTGCAAGGATTTATACATAATCTCGGGGACGATGGC TGTAGCATAAGTGTGGCCCTGGAGTCTCGTCTTGGAGATGCCACCTTTTCTAGGTTGTCTGGTAAAAATGTTCGCATTGATCGTATTCAGGGACTAGCAG ATGCTCTGACGTATGAGAGAAATTGTGAAGCCCTGATGCTGCTTCAGAAGAATGGTTTGCGGAAGAAAAACCCTTCAATTGCTATTGCAGCTACGCTGTT CGGTGACAAAGAAGATGTTGCATGGCTGGAGGAAAACAATGTAGTAGACTGGCAGGGAGTGAATTTGGAGGAATCCAGGAGGATCACAAAGTTTGATGAT TCACAGAAAAGAGCAATTGCCTTGGGTTTGAATAGGAAAAGACCAATACTTCTAATTCAAGGGCCTCCTGGCACTGGGAAGTCAGGTTTGCTTAAGGAAA TCATCATGCTTGCTGTTCAACAAGGTGAAAGGGTACTTTTAACAGCGCCAACAAATGCTGCTGTCGACAATATGGTAGAAAAACTTTCAGATGTTGGATT AAACATTGTCCGATTCGGGAACCCTGCACGTATTTCCTCGACAGTAGCATCAAAGTCGTTAGGAGAGATAGTTAACTCAAAGCTTGCAACATTCAGAGCT GAGCTTGAGAGGAAGAAGTCAGATCTAAGGAAAGACTTGCGATTCTGCCTGAAAGATGATTCTCTAGCTGCTGGCATACGACAACTTTTGAAACAACTAG GCAGGGCACTGCAGAAAAAAGAAAAGGAGACAATAAAGGAAGTGCTATCAACTTCACAAGTTGTTCTAGCCACCAACACTGGAGCTGCTGATCCATCGAT AAGAAAGCTTCCATCATTTGATCTGGTTGTAATAGATGAGGCAGGGCAGGCAATTGAACCTTCCTGTTGGATTCCAATACTCCAGGGTAACCGCTGCATT GTTGCAGGTGACCAGTGCCAGCTTGCTCCATTAATTTTATCAAGAAAAGCCCTAGAGGGTGGCCTTGGAGTATCTCTACTGGAACGGGCTGCTTCTCTCC ACAAAAGGGTCCTCACAACCAGATTAACCACACAATACCGTATGAATGATGCGATAGCCAGCTGGGCCTCCAAGGAAATGTACGGTGGATCTTTGAAGTC CTCTCCGGTTGTTGCCTCGCATCTTCTTGTGGATTCTCCATTTGTTAAGCCAACATGGGTTACTCAATGTCCACTGTTGCTGCTTGACACAAGGATGCCG TATGGAAGTTTGTCGGCTGATTGTGAAGAGCATCTGGATCCAGCTGGAACAGGCTCATTTTACAATGAAGGGGAAGCTGATATTGTGGTACAACATGTGC TCTCGTTGATATATGCGGGTGTAAGAGCAGGAGAAATTGTGGTTCAATCACCTTACGTGGCACAGGTGCAGTTCCTGAGGGAGAGATTGGGTGAGCTTCC AGAGTCCGTTGACGTTCAGGTCTCAACCGTGGATAGCTTCCAAGGACGGGAAGCTGATGCAGTAATTATATCAATGGTGAGGTCGAATACACTGGGAGCA GTGGGGTTTTTGGGGGACAACAGGAGAATGAATGTGGCAATAACAAGGGCAAGGAAGCACGTAGCAGTGGTGTGTGATAGCTCAACGATATGCCACAACA GCTTCTTGGCAAGGCTGTTGCGGCACATCCGGTATTTCGGGCTGTTGCGCCCCATCCGGTATTTCGGAAGAGTGAAGCATGCTGAGCCTGGTAGCTTTGG TGGTTCTGGACTTGGGATGGATCCAATGTTGCCATCAATTGGTTAA
AA sequence Show only first row Show all	>Lus10024527 pacid=23169586 polypeptide=Lus10024527 locus=Lus10024527.g ID=Lus10024527.BGIv1.0 annot-version=v1.0 METAFALPHHPPLVSHSSLPDALTRPHLLFLRHKNHHHNCSLRCIQVQSQHQQPPPAPVPASATTTTTGRRKWKARRNFTTRGKTFKTKSTAAPEAVAPP HKDKDKEKEEVDVSMEALNQKGDPLGRKDLGKSVVKWISLGMKAMASDFATAEEQGEFSELKQRMGPGLTFVMQAQTYLNAFPMPLGLEAVCLKACTHYP TLFDNFQRELLDVLRGMQEKGSIQDWRQTESWKLFKYLANSAQHRQIARKITQPKRVQGALGMDLEKAEAIQERIDDYVKRMSELLLVERDAEVGFTQEE LNVVPTPDKTSDSSGPIEFLVTHGQAQQEICDTICNLYAVSSSTGLGGMNLVLFRIDGNHRLPPTNLTPGDMVCVRTCDSKGTVETSCLQGFIHNLGDDG CSISVALESRLGDATFSRLSGKNVRIDRIQGLADALTYERNCEALMLLQKNGLRKKNPSIAIAATLFGDKEDVAWLEENNVVDWQGVNLEESRRITKFDD SQKRAIALGLNRKRPILLIQGPPGTGKSGLLKEIIMLAVQQGERVLLTAPTNAAVDNMVEKLSDVGLNIVRFGNPARISSTVASKSLGEIVNSKLATFRA ELERKKSDLRKDLRFCLKDDSLAAGIRQLLKQLGRALQKKEKETIKEVLSTSQVVLATNTGAADPSIRKLPSFDLVVIDEAGQAIEPSCWIPILQGNRCI VAGDQCQLAPLILSRKALEGGLGVSLLERAASLHKRVLTTRLTTQYRMNDAIASWASKEMYGGSLKSSPVVASHLLVDSPFVKPTWVTQCPLLLLDTRMP YGSLSADCEEHLDPAGTGSFYNEGEADIVVQHVLSLIYAGVRAGEIVVQSPYVAQVQFLRERLGELPESVDVQVSTVDSFQGREADAVIISMVRSNTLGA VGFLGDNRRMNVAITRARKHVAVVCDSSTICHNSFLARLLRHIRYFGLLRPIRYFGRVKHAEPGSFGGSGLGMDPMLPSIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	0	1
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	1.4	0.9313
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	2.0	0.9130
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	2.0	0.9315
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	4.6	0.9203
AT5G56860	GATA	GATA21, GNC	GATA, nitrate-inducible, carbo...		Lus10040556 [exp]	5.6	0.8330
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	7.7	0.8883
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	8.9	0.9022
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10013927 [exp]	11.0	0.8381
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	12.7	0.8695
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	13.5	0.8641

Compare expression of checked genes

Lus10024527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.