Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024528 pacid=23169601 polypeptide=Lus10024528 locus=Lus10024528.g ID=Lus10024528.BGIv1.0 annot-version=v1.0 ATGTGCCAGAACCTTGCTCAATCCAGATGGCCGGAATTCTGGTCCGTCTCCTCTAATAACCCGAGTTCGAATCTCACTTCCAGGAATCGAACGAAATCGA ACAACAAACCTTCCCCTCTGCAAGAAACGTCGACGTCTGACCCCGTAGCTGGGAACTCGATTGAAAGGAAGGTGTTCTCCGCCGGTGGGGATCTCCTTTC TTTGATTCAAATCGCCAACCTGACCGAAGTCAAACTAAGAGTTTCCGCAGGCCGACGCTTCGTTCATCGGGATCGGACTCCTAGAGAGATTCAAAGCCTG CAGAGCATCGGTCTAGCTTCGTAG
AA sequence Show only first row Show all	>Lus10024528 pacid=23169601 polypeptide=Lus10024528 locus=Lus10024528.g ID=Lus10024528.BGIv1.0 annot-version=v1.0 MCQNLAQSRWPEFWSVSSNNPSSNLTSRNRTKSNNKPSPLQETSTSDPVAGNSIERKVFSAGGDLLSLIQIANLTEVKLRVSAGRRFVHRDRTPREIQSL QSIGLAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024528 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	13.9	0.7515
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	16.5	0.7360
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10019171 [exp]	18.2	0.7134
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	20.6	0.7411
AT5G49610			F-box family protein (.1)		Lus10037619 [exp]	22.0	0.6079
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	26.1	0.6900
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016321 [exp]	31.6	0.6992
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	33.2	0.7223
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	36.1	0.7101
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	43.4	0.6909

Compare expression of checked genes

Lus10024528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.