Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64890 354 / 4e-120 Major facilitator superfamily protein (.1) AT1G04570 211 / 3e-63 Major facilitator superfamily protein (.1) AT2G33280 162 / 4e-46 Major facilitator superfamily protein (.1) AT5G54860 110 / 2e-26 Major facilitator superfamily protein (.1) AT2G32040 102 / 1e-23 Major facilitator superfamily protein (.1) AT5G10820 86 / 3e-18 Major facilitator superfamily protein (.1) AT5G25050 80 / 3e-16 Major facilitator superfamily protein (.1) AT1G79710 76 / 6e-15 Major facilitator superfamily protein (.1) AT5G25040 73 / 7e-14 Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024977 [exp] 547 / 0 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10023708 [exp] 198 / 9e-59 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10010565 [exp] 102 / 2e-23 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 101 / 4e-23 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 87 / 2e-18 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 82 / 1e-16 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 82 / 1e-16 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 78 / 2e-15 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 78 / 2e-15 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043000 [exp] 397 / 9e-137 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 394 / 1e-135 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 233 / 2e-71 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 232 / 3e-71 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 146 / 3e-39 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 105 / 2e-24 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 97 / 7e-22 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 96 / 1e-21 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 92 / 4e-20 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 77 / 3e-15 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10024529 pacid=23169591 polypeptide=Lus10024529 locus=Lus10024529.g ID=Lus10024529.BGIv1.0 annot-version=v1.0 ATGGTCTTGTCATCATCTTCTTCGCCGCCTGGCCACCGGCGTAATTCTATCCGGGGATTACTTGGTCTGGGATACTGGGTCCAAGGATTCAGATGTTTCC CATGGCTTGCAGTGAATGTCTTCCTGAAAGACGGACTCAATCTGGACCCTTCCACCCACCAATTCCTCCAGAACTCCGCCAATCTCCCCATGGTCGGTAA ACCTCTCTACGGTCTCATCTCCGATATCTTCTATATCTCTGGCCAGCACCGCATCCCTTACGTTGCATTCGGTGGCAATCTCGTGGCTGTCTATCACTCT CCTCTCTCCATCAAGCGTCTCAATGTTGAGCTTATCTGTAGGCGGCAGGAAGCCAGTCTGATGGATCTTCTATTAAAAGCTCAGTCATCTTCAGCTAGTG ACCTCCAGTCATTTGTCTTGGTAGCATCCTCTGCTGGAGGTGTCCTTGGCAATCTCCTAGGTGGTATTTCCTTGAGCAAATTCTCTCCTCGAGCTATGTT CCTTGGCTTTGGCATCATTGCTTTTGCGCACTTTCTTATAACCATTTTTGTCCGAGAAAGATCCATCAACCTCCCGAAAGCTCCACCTAATGCTGGGTTA AGTAAACAGCTCCTACAACTCTCGGTGGCATTGCGCAAACGGGAAATCGCTTACTCAGTCCCCTGGTTAGCTGGTTCCTTTGCAATCATCCCAGCACTGA CAGGAACTATGTTTTACTACCAAACACAACACCTAAAGATTGACTCGTCATTGTTGGGAATGTCCACAGTGTTTGGCCAAGCAGCAATGCTTATTTGGAG CATTGTTTACAGTCATCGACTGAAGTTTGTTCCTGCAAGGAAATTGATTGCAGCTATTCAAACAACAATGACAGGGCTAATGATCTCAGATGCCCTTTTT GTCCAGGGATTTTACCGCAATCTGGGGGTGCCGGATTCACTCTACGTGGTGACATTCCCAAGCCTCTTGGAGGTTCTATACTTCTTCAAGCTTCTTCCAT TCAACATCATGATGACACAGCTATGCCCTCCAGGGTGCGAAGGGTCCCTGATGGCGATAGTCGCATCTGCCGTAGCTCATTCATTCATCTACCAACTAGT TTGA
AA sequence Show only first row Show all	>Lus10024529 pacid=23169591 polypeptide=Lus10024529 locus=Lus10024529.g ID=Lus10024529.BGIv1.0 annot-version=v1.0 MVLSSSSSPPGHRRNSIRGLLGLGYWVQGFRCFPWLAVNVFLKDGLNLDPSTHQFLQNSANLPMVGKPLYGLISDIFYISGQHRIPYVAFGGNLVAVYHS PLSIKRLNVELICRRQEASLMDLLLKAQSSSASDLQSFVLVASSAGGVLGNLLGGISLSKFSPRAMFLGFGIIAFAHFLITIFVRERSINLPKAPPNAGL SKQLLQLSVALRKREIAYSVPWLAGSFAIIPALTGTMFYYQTQHLKIDSSLLGMSTVFGQAAMLIWSIVYSHRLKFVPARKLIAAIQTTMTGLMISDALF VQGFYRNLGVPDSLYVVTFPSLLEVLYFFKLLPFNIMMTQLCPPGCEGSLMAIVASAVAHSFIYQLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64890			Major facilitator superfamily ...		Lus10024529 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	13.9	0.9169
					Lus10011724 [exp]	21.5	0.9139
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	23.0	0.9116
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	24.8	0.9086
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	25.5	0.9088
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	26.8	0.9031
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	28.3	0.9026
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	32.1	0.9065
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	34.1	0.9027
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	35.3	0.9019

Compare expression of checked genes

Lus10024529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.